Browse Element(s) Details


Os.28011.1.S1_at

Description gb:AY256682.1
DB_XREF= gi:30060268
TID=Os.28011.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.28011 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) putative brown planthopper-inducible protein BpHi008A mRNA, complete cds.
PROD=putative brown planthopper-inducible proteinBpHi008A
FL= gb:AK063797.1 gb:AY256682.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2973010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g29700OsAffx.27868.1.S1_at10/116+17043280..17045348F-box domain containing protein, expressed
LOC_Os06g29710OsAffx.15668.1.S1_at11/116+17053548..17065625F-box domain containing protein, expressed
LOC_Os06g29730Os.28011.1.S1_at10/116+17065931..17067615expressed protein
LOC_Os06g29740OsAffx.4963.1.S1_at11/116+17076764..17079195F-box domain containing protein
LOC_Os06g29750NANA6+17081882..17084807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g29760Os.10703.2.S1_x_at1/116+17085123..17091233retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28011.1.S1_at--366--2631Chr06:17067553..17067577 (25 bp)
AACCATGGCGTCTCTTAGAGCCACC
LOC_Os06g29730
Os.28011.1.S1_at--137--5871Chr06:17067536..17067560 (25 bp)
GAGCCACCACACTCCTTGTGTTGAT
LOC_Os06g29730
Os.28011.1.S1_at--249--2171Chr06:17067528..17067552 (25 bp)
ACACTCCTTGTGTTGATGCAAATTA
LOC_Os06g29730
Os.28011.1.S1_at--22--6811Chr06:17067496..17067520 (25 bp)
GTTTTACACCGTCATCTTAAGCTGC
LOC_Os06g29730
Os.28011.1.S1_at--51--3671Chr06:17067481..17067505 (25 bp)
CTTAAGCTGCTCGTTTTCTGATGCC
LOC_Os06g29730
Os.28011.1.S1_at--196--9171NONE
TGCCCGAACTTTCCCAGGCGGAGAA
NONE
Os.28011.1.S1_at--267--7891Chr06:17066275..17066299 (25 bp)
GGTTAGACCCAAATCATCCAGTATG
LOC_Os06g29730
Os.28011.1.S1_at--645--3071Chr06:17066264..17066288 (25 bp)
AATCATCCAGTATGCGTTGGCGGCG
LOC_Os06g29730
Os.28011.1.S1_at--833--1191Chr06:17066054..17066078 (25 bp)
AGTATTCACTAGCTGCTCACACTGC
LOC_Os06g29730
Os.28011.1.S1_at--1142--1591Chr06:17066044..17066068 (25 bp)
AGCTGCTCACACTGCATGAGAGCTA
LOC_Os06g29730
Os.28011.1.S1_at--179--9791Chr06:17065933..17065957 (25 bp)
TAAGACATGTGTACTCTGGATCTGA
LOC_Os06g29730
Target Sequence 
AACCATGGCGTCTCTTAGAGCCACCACACTCCTTGTGTTGATGCAAATTATTATGGTGTTTTACACCGTCATCTTAAGCT
GCTCGTTTTCTGATGCCCGAACTTTCCCAGGCGGAGAAGGTGGGTTAGACCCAAATCATCCAGTATGCGTTGGCGGCGCG
TGTCCAACACCAGGTCTACCATACACTAATCCACGTGNTCCTTGCATATACCGTAACANGTGCAATCCACCAGGACGGAT
GGGTGATCCATAAGTAATTTTCATCATCAATATTTATCGTTGTGATCCAGTATACGTCCACATCGTCCACATGACAATAG
TGTGTGTTTGTGTATGTTATACTAGTATTCACTAGCTGCTCACACTGCATGAGAGCTAGTTAATTAAGAGAATGTCTATG
TATGACAAATAATGTACTGTGGTACTATATATGTATCCCCCTGTCTCGGCAATATNTGGATTAATAAGACATGTGTACTC
TGGATCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28011.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis