Browse Element(s) Details


OsAffx.27868.1.S1_at

Description tigr:9634.m02850
TID=OsAffx.27868.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2970010/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g29670OsAffx.15667.1.S1_at6/116+17019713..17020078hypothetical protein
LOC_Os06g29680NANA6+17028104..17028559hypothetical protein
LOC_Os06g29690OsAffx.27867.1.S1_s_at11/116+17034117..17035896Dynein light chain type 1 family protein, expressed
LOC_Os06g29700OsAffx.27868.1.S1_at10/116+17043280..17045348F-box domain containing protein, expressed
LOC_Os06g29710OsAffx.15668.1.S1_at11/116+17053548..17065625F-box domain containing protein, expressed
LOC_Os06g29730Os.28011.1.S1_at10/116+17065931..17067615expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27868.1.S1_at--808--2411Chr06:17044477..17044501 (25 bp)
AAAAAACATGGTCCGCAGCGTCCGG
LOC_Os06g29700
OsAffx.27868.1.S1_at--11--2811Chr06:17044544..17044568 (25 bp)
AAGATGTTGCCTATCTTCCTCAGAT
LOC_Os06g29700
OsAffx.27868.1.S1_at--1046--10531NONE
TTCAGTGCGAGACCACTATCCACAA
NONE
OsAffx.27868.1.S1_at--647--631Chr06:17044720..17044744 (25 bp)
ATGCTCAATCCCAAGTTCTTGCAGC
LOC_Os06g29700
OsAffx.27868.1.S1_at--406--8691Chr06:17044878..17044902 (25 bp)
TGTGCTGGCACAATCGTATTCGTCT
LOC_Os06g29700
OsAffx.27868.1.S1_at--541--6871Chr06:17044893..17044917 (25 bp)
GTATTCGTCTTCAGCTGATCGTCTG
LOC_Os06g29700
OsAffx.27868.1.S1_at--1038--6391Chr06:17044909..17044933 (25 bp)
GATCGTCTGCATTCCAGCATGAGGA
LOC_Os06g29700
OsAffx.27868.1.S1_at--290--6191Chr06:17044929..17044953 (25 bp)
GAGGACTTTCATGGCTTCTGTCAAA
LOC_Os06g29700
OsAffx.27868.1.S1_at--261--8831Chr06:17044976..17045000 (25 bp)
TGATTGTGTGTGAGAGCCCGTTTCC
LOC_Os06g29700
OsAffx.27868.1.S1_at--223--6851Chr06:17044995..17045019 (25 bp)
GTTTCCTTCGGATGGTACAGCATGG
LOC_Os06g29700
OsAffx.27868.1.S1_at--229--951Chr06:17045048..17045072 (25 bp)
AGGACCCTTTCGACGTTTCACAGTG
LOC_Os06g29700
Target Sequence 
AAAAAACATGGTCCGCAGCGTCCGGGTGTTGGGAATTCAGGTGAAACTTTTTAACCACAATGAAGTCAAGATGTTGCCTA
TCTTCCTCAGATGTTTTCCCAACGTCGAGACACTCTACATTCAGTGCGAGACCACTATCCACAAGCCCCCTGGCATGCTC
AATCCCAAGTTCTTGCAGCAGACTGGCCCAATCGATTGCCTTCAGAAGCATATCAAGAAGGTGATCATCCGTGAATTCAG
AGTACATAGGAGCGAGCTTGATTTCGTCAAGTTCATCGCTGAGCGTGGGCAGGTGCTGGAGAAGATTGTCATTGTGCTGG
CACAATCGTATTCGTCTTCAGCTGATCGTCTGCATTCCAGCATGAGGACTTTCATGGCTTCTGTCAAATTGGCCAATGAA
GACTGTAAGGTGATTGTGTGTGAGAGCCCGTTTCCTTCGGATGGTACAGCATGGTGCTTCCAGGGGGCATTCAACATGTC
AAAGGACCCTTTCGACGTTTCACAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27868.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis