Browse Element(s) Details


OsAffx.15668.1.S1_at

Description tigr:9634.m02851
TID=OsAffx.15668.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2971011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g29680NANA6+17028104..17028559hypothetical protein
LOC_Os06g29690OsAffx.27867.1.S1_s_at11/116+17034117..17035896Dynein light chain type 1 family protein, expressed
LOC_Os06g29700OsAffx.27868.1.S1_at10/116+17043280..17045348F-box domain containing protein, expressed
LOC_Os06g29710OsAffx.15668.1.S1_at11/116+17053548..17065625F-box domain containing protein, expressed
LOC_Os06g29730Os.28011.1.S1_at10/116+17065931..17067615expressed protein
LOC_Os06g29740OsAffx.4963.1.S1_at11/116+17076764..17079195F-box domain containing protein
LOC_Os06g29750NANA6+17081882..17084807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g29760Os.10703.2.S1_x_at1/116+17085123..17091233retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15668.1.S1_at--751--8911Chr06:17054578..17054602 (25 bp)
TGAGCATCGGCAACACCGACATCAG
LOC_Os06g29710
OsAffx.15668.1.S1_at--1151--2151Chr06:17054590..17054715 (25 bp)
ACACCGACATCAGGGCTGGGACCAA
LOC_Os06g29710
OsAffx.15668.1.S1_at--606--7951Chr06:17054709..17054733 (25 bp)
GGACCAAGCCGACCCGAAGAACTAT
LOC_Os06g29710
OsAffx.15668.1.S1_at--54--3391Chr06:17054721..17054745 (25 bp)
CCCGAAGAACTATGGTCCCGAGTGT
LOC_Os06g29710
OsAffx.15668.1.S1_at--419--10111Chr06:17054731..17054755 (25 bp)
TATGGTCCCGAGTGTTCAGATGCTG
LOC_Os06g29710
OsAffx.15668.1.S1_at--739--3891Chr06:17054753..17054777 (25 bp)
CTGGGAATTCAGCTCAAACTCTTTG
LOC_Os06g29710
OsAffx.15668.1.S1_at--177--3091Chr06:17054783..17054807 (25 bp)
AATCAAGTCAGGATGTTGCCGAGCT
LOC_Os06g29710
OsAffx.15668.1.S1_at--1021--991Chr06:17054792..17054816 (25 bp)
AGGATGTTGCCGAGCTTCCTCAGAT
LOC_Os06g29710
OsAffx.15668.1.S1_at--228--2011Chr06:17054968..17054992 (25 bp)
ACTCTTAGTGGCAACACCACCGGCA
LOC_Os06g29710
OsAffx.15668.1.S1_at--769--9311Chr06:17055000..17055024 (25 bp)
TCCCAAGTTGTTGCAGGAGACCTCC
LOC_Os06g29710
OsAffx.15668.1.S1_at--1071--971Chr06:17055014..17055038 (25 bp)
AGGAGACCTCCCCAATTGAGTGCCT
LOC_Os06g29710
Target Sequence 
TGAGCATCGGCAACACCGACATCAGGGCTGGGACCAAGCCGACCCGAAGAACTATGGTCCCGAGTGTTCAGATGCTGGGA
ATTCAGCTCAAACTCTTTGACAACAATCAAGTCAGGATGTTGCCGAGCTTCCTCAGATGCTTTCCCAATGTCGAGACACT
CTACATTCAGTCAGAGACCACTCTTAGTGGCAACACCACCGGCAAGCTCAATCCCAAGTTGTTGCAGGAGACCTCCCCAA
TTGAGTGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15668.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis