Browse Element(s) Details


OsAffx.4994.1.S1_at

Description tigr:9634.m03167
TID=OsAffx.4994.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3373011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33690Os.55529.1.S1_at2/116+19603065..19605119CAPIP1, putative, expressed
LOC_Os06g33700OsAffx.27920.1.S1_at11/116+19609357..19609802hypothetical protein
LOC_Os06g33710Os.4600.1.S1_at10/116+19613317..19618692Spermidine synthase 2, putative, expressed
LOC_Os06g33720Os.54557.1.S1_at10/116+19618926..19620613Flavin-binding monooxygenase-like family protein, expressed
LOC_Os06g33730OsAffx.4994.1.S1_at11/116+19627998..19628393hypothetical protein
LOC_Os06g33739Os.10731.2.A1_at1/116+19633177..19634533retrotransposon protein, putative, unclassified
LOC_Os06g33750NANA6+19636471..19641628retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g33759Os.10731.2.A1_at1/116+19642415..19643771retrotransposon protein, putative, unclassified
LOC_Os06g33770NANA6+19646201..19647091retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g33780OsAffx.24317.2.S1_x_at10/116+19649617..19651042hypothetical protein
LOC_Os06g33790NANA6+19653274..19653531hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4994.1.S1_at--604--6931Chr06:19628032..19628056 (25 bp)
GTAGTCGCCGCCTTAGGCCAACTGT
LOC_Os06g33730
OsAffx.4994.1.S1_at--889--9331Chr06:19628062..19628086 (25 bp)
TCGCCCAGTTGCCTCATGTTGTCAT
LOC_Os06g33730
OsAffx.4994.1.S1_at--500--731Chr06:19628077..19628101 (25 bp)
ATGTTGTCATCGAATCTCCCTGCAA
LOC_Os06g33730
OsAffx.4994.1.S1_at--924--4091Chr06:19628087..19628111 (25 bp)
CGAATCTCCCTGCAACAATGCCATG
LOC_Os06g33730
OsAffx.4994.1.S1_at--502--3031Chr06:19628103..19628127 (25 bp)
AATGCCATGGGCCACAGACCAATAG
LOC_Os06g33730
OsAffx.4994.1.S1_at--1094--291Chr06:19628124..19628148 (25 bp)
ATAGCCTACAAAACTGCCATCCCAG
LOC_Os06g33730
OsAffx.4994.1.S1_at--1108--9371Chr06:19628163..19628187 (25 bp)
TCGTTGTTGCGCTGGGCTTCGGCCT
LOC_Os06g33730
OsAffx.4994.1.S1_at--181--3351Chr06:19628210..19628234 (25 bp)
CACCGTGGACGGCTTACTCCTATGT
LOC_Os06g33730
OsAffx.4994.1.S1_at--360--10451Chr06:19628223..19628247 (25 bp)
TTACTCCTATGTCGCGTCGGGTTTA
LOC_Os06g33730
OsAffx.4994.1.S1_at--621--771Chr06:19628231..19628255 (25 bp)
ATGTCGCGTCGGGTTTATGCTGTCG
LOC_Os06g33730
OsAffx.4994.1.S1_at--977--9891Chr06:19628282..19628306 (25 bp)
TACTATTGTCGTCCACATCACGCCA
LOC_Os06g33730
Target Sequence 
GTAGTCGCCGCCTTAGGCCAACTGTCCGCCTCGCCCAGTTGCCTCATGTTGTCATCGAATCTCCCTGCAACAATGCCATG
GGCCACAGACCAATAGCCTACAAAACTGCCATCCCAGCTGGCGTCACCCCGTCGTTGTTGCGCTGGGCTTCGGCCTCCTA
TCGGCCTCCACCTACCGCCACCGTGGACGGCTTACTCCTATGTCGCGTCGGGTTTATGCTGTCGCCGGCCTCGGCCTCCC
ATCAATCTCCTACTATTGTCGTCCACATCACGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4994.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis