Browse Element(s) Details


OsAffx.5025.1.S1_at

Description tigr:9634.m03414
TID=OsAffx.5025.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g360304/11SWIM zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36000OsAffx.15769.1.S1_at11/116+21039439..21040540AP2 domain containing protein
LOC_Os06g36000OsAffx.24232.1.S1_at2/116+21039439..21040540AP2 domain containing protein
LOC_Os06g36010Os.4968.1.S1_at11/116+21047728..21048726Plastocyanin-like domain containing protein, expressed
LOC_Os06g36020NANA6+21054964..21058845retrotransposon protein, putative, unclassified
LOC_Os06g36030OsAffx.5025.1.S1_at4/116+21060009..21061010SWIM zinc finger family protein, expressed
LOC_Os06g36040NANA6+21062305..21062946expressed protein
LOC_Os06g36050Os.5208.1.S1_at11/116+21065265..21068929expressed protein
LOC_Os06g36060NANA6+21072819..21078104hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5025.1.S1_at--245--4091Chr06:21060076..21060100 (25 bp)
CGAGCCGGATCATCCGGGCGCTGCA
LOC_Os06g36030
OsAffx.5025.1.S1_at--1100--9491Chr06:21060265..21060289 (25 bp)
TCTCGCTCGACGAGGCCTGCGTGTG
LOC_Os06g36030
OsAffx.5025.1.S1_at--381--4571Chr06:21060373..21060397 (25 bp)
GCGCGCGGGAGAGGTTCCACCAGCT
LOC_Os06g36030
OsAffx.5025.1.S1_at--681--6691Chr06:21060386..21060410 (25 bp)
GTTCCACCAGCTGTGGTCGGCGAGG
LOC_Os06g36030
OsAffx.5025.1.S1_at--351--3931NONE
CGGCCTGCCCGCTTTGTGGTAGAGG
NONE
OsAffx.5025.1.S1_at--932--3671Chr06:21061106..21061130 (25 bp)
CTTTGTGGTAGAGGAGCAATACGTC
NONE
OsAffx.5025.1.S1_at--52--971Chr06:21061117..21061141 (25 bp)
AGGAGCAATACGTCGAACACCTTCC
NONE
OsAffx.5025.1.S1_at--843--3071Chr06:21061123..21061147 (25 bp)
AATACGTCGAACACCTTCCAGACAA
NONE
OsAffx.5025.1.S1_at--254--7231Chr06:21061128..21061152 (25 bp)
GTCGAACACCTTCCAGACAACGTGA
NONE
OsAffx.5025.1.S1_at--143--2491Chr06:21061132..21061156 (25 bp)
AACACCTTCCAGACAACGTGAGAAA
NONE
OsAffx.5025.1.S1_at--493--2391Chr06:21061166..21061190 (25 bp)
AAACAGAGGAAAGACAGAGCAAGGC
NONE
Target Sequence 
CGAGCCGGATCATCCGGGCGCTGCAGCACCAGCTGCGGCTGCTGCACCGCGCGGGGCCCGAGTTCTTCGTGCTGGGCGCG
ACGGGGAACGTGTACACGGTGACGCTGGCGGCGGCGCCGGCGTGCACGTGCCCGGACCCGTCCGTGCCGTGCAAGCACAT
CCTCTTCGTCCTCCTCCGCGTGCTCGGCCTCTCGCTCGACGAGGCCTGCGTGTGGCGGCAGTCGCTCCGCCCGTGCCAGG
TGGCGCGGCTCGTCGCCGCGCCGACGTGCGCCGAGGCGGACGTCGTGGCGGGGCCCCGCGCGCGGGAGAGGTTCCACCAG
CTGTGGTCGGCGAGGGCCGCCGCCAAGGCCGAGGAGAGCCGCCGCCGCCGACGACGCGACGACCAGGCCGCCGCAGCCGG
CGCGTCGGGGAGGCTCGACGGCGCGGCCTGCCCGCTTTGTGGTAGAGGAGCAATACGTCGAACACCTTCCAGACAACGTG
AGAAAACGAGCAAAAAACAGAGGAAAGACAGAGCAAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5025.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis