Browse Element(s) Details


OsAffx.5065.1.S1_x_at

Description tigr:9634.m03825
TID=OsAffx.5065.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g399128/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39900Os.15722.1.S1_s_at11/116+23720780..23725850Agenet domain containing protein, expressed
LOC_Os06g39900Os.52129.1.S1_at11/116+23720780..23725850Agenet domain containing protein, expressed
LOC_Os06g39900OsAffx.28016.1.S1_at2/116+23720780..23725850Agenet domain containing protein, expressed
LOC_Os06g39906Os.26397.1.S1_at11/116+23731558..23733539Homeobox domain containing protein, expressed
LOC_Os06g39912Os.37009.1.S1_at11/116+23735838..23736879expressed protein
LOC_Os06g39912OsAffx.5065.1.S1_x_at8/116+23735838..23736879expressed protein
LOC_Os06g39920NANA6+23742165..23746361retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g39930NANA6+23747418..23753573retrotransposon protein, putative, unclassified
LOC_Os06g39940NANA6+23753901..23757420transposon protein, putative, unclassified
LOC_Os06g39950NANA6+23759287..23763196retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5065.1.S1_x_at--488--3991Chr06:23734050..23734305 (25 bp)
CGTGTTGCTATTTTCAATATGGAGA
NONE
OsAffx.5065.1.S1_x_at--47--5591Chr06:23734304..23734328 (25 bp)
GAAATTTCGGAGTTCATCAGAAGGA
NONE
OsAffx.5065.1.S1_x_at--839--9011Chr06:23734370..23734394 (25 bp)
TGCAAGGCTGCAACACAGAGATAGT
NONE
OsAffx.5065.1.S1_x_at--1119--3891Chr06:23735979..23736003 (25 bp)
CTGGCTTGCAAAGATCAGCGACAAC
LOC_Os06g39912
OsAffx.5065.1.S1_x_at--74--2511Chr06:23736001..23736025 (25 bp)
AACATTCAGAAGGTCCGGTTCGTCA
LOC_Os06g39912
OsAffx.5065.1.S1_x_at--806--4051Chr06:23736040..23736064 (25 bp)
CGAGCGGTTCTTGACCGAGGACGCA
LOC_Os06g39912
OsAffx.5065.1.S1_x_at--1010--71Chr06:23736132..23736156 (25 bp)
ATTCCAAGAGCGTCGGGAGCATCGG
LOC_Os06g39912
OsAffx.5065.1.S1_x_at--989--1852Chr06:23736180..23736204 (25 bp)
ACGACGGCGACGACAGCGAGAAGAC
LOC_Os06g39912
OsAffx.5065.1.S1_x_at--980--1451Chr06:23736252..23736276 (25 bp)
AGAAGGAGGACGACAACCGCAGCCA
LOC_Os06g39912
OsAffx.5065.1.S1_x_at--1042--2611Chr06:23736266..23736290 (25 bp)
AACCGCAGCCAGCAGGTGTTCAGGA
LOC_Os06g39912
OsAffx.5065.1.S1_x_at--28--7431Chr06:23736281..23736305 (25 bp)
GTGTTCAGGACCAAGGACATCGCCC
LOC_Os06g39912
Target Sequence 
CGTGTTGCTATTTTCAATATGGAGAAATTTCGGAGTTCATCAGAAGGAAACTATGTGGAAACAGGGGAGGGAGGTAGCAT
CTGGGGACCTGCAAGGCTGCAACACAGAGATAGTGAGAGAGGAGTGGTGGTTTTGGTGGTGCAGATGATGGCTGGCTTGC
AAAGATCAGCGACAACATTCAGAAGGTCCGGTTCGTCAGGCCTGGTCTGGGACGAGCGGTTCTTGACCGAGGACGCAGAG
GCGGCCAAGGCCGGCGATGGCGATGGCGGTGGCGGCACGGAGGAGCCCCAGCCGGAGCTCCGGCATTCCAAGAGCGTCGG
GAGCATCGGCATGATGCGCCGTGTCGCTGCCGACGACGGCGACGACAGCGAGAAGACGACGAAGCAGCAGAGGAAGAAGA
AGAAGAAGAAGAAGAAGGACGGTCAGAAGGAGGACGACAACCGCAGCCAGCAGGTGTTCAGGACCAAGGACATCGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5065.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis