Browse Element(s) Details


OsAffx.5073.1.S1_at

Description tigr:9634.m03964
TID=OsAffx.5073.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4122011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41190NANA6+24650254..24651537retrotransposon protein, putative, unclassified
LOC_Os06g41200OsAffx.20275.1.S1_at1/116+24652426..24655124retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g41210OsAffx.31656.2.S1_at10/116+24667966..24669355hypothetical protein
LOC_Os06g41220OsAffx.5073.1.S1_at11/116+24671393..24673590hypothetical protein
LOC_Os06g41229NANA6+24678225..24678457NA
LOC_Os06g41240Os.11881.1.S1_at11/116+24679292..24680232expressed protein
LOC_Os06g41250OsAffx.7362.1.S1_x_at1/116+24683276..24689295transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41260OsAffx.5074.1.S1_at11/116+24691920..24692644hypothetical protein
LOC_Os06g41270NANA6+24694685..24695080hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5073.1.S1_at--1034--3331Chr06:24672596..24672620 (25 bp)
CAGCCCTCGGTCTGGTCGTCGTCGT
LOC_Os06g41220
OsAffx.5073.1.S1_at--1036--651Chr06:24672430..24672454 (25 bp)
ATGCAAGCTGGCGTCAACATGAGCA
LOC_Os06g41220
OsAffx.5073.1.S1_at--957--5851Chr06:24671553..24671572 (20 bp)
GAGCGAGGAAAAAACCTCCGACAAT
LOC_Os06g41220
OsAffx.5073.1.S1_at--628--2631Chr06:24671541..24671565 (25 bp)
AACCTCCGACAATGGAGCCGGAGCT
LOC_Os06g41220
OsAffx.5073.1.S1_at--502--4091Chr06:24671504..24671528 (25 bp)
CGACCCTGAGTTCCCACGTGCGTGG
LOC_Os06g41220
OsAffx.5073.1.S1_at--81--3351Chr06:24671490..24671514 (25 bp)
CACGTGCGTGGCTCTGGCGATGTAC
LOC_Os06g41220
OsAffx.5073.1.S1_at--26--8491Chr06:24671482..24671506 (25 bp)
TGGCTCTGGCGATGTACACCTCTTT
LOC_Os06g41220
OsAffx.5073.1.S1_at--740--751Chr06:24671471..24671495 (25 bp)
ATGTACACCTCTTTGGCGTGGTCGA
LOC_Os06g41220
OsAffx.5073.1.S1_at--269--3771Chr06:24671463..24671487 (25 bp)
CTCTTTGGCGTGGTCGACGCATTAG
LOC_Os06g41220
OsAffx.5073.1.S1_at--127--7511Chr06:24671454..24671478 (25 bp)
GTGGTCGACGCATTAGGACCCCTCT
LOC_Os06g41220
OsAffx.5073.1.S1_at--101--971Chr06:24671440..24671464 (25 bp)
AGGACCCCTCTGTCATTGGCTGGTG
LOC_Os06g41220
Target Sequence 
CAGCCCTCGGTCTGGTCGTCGTCGTCGTCGTGATCCTCGTCGTCGGTGCGCTGTTCCCCATCCTCGGCCCGACCGGCTCC
TCCAGCTTCGCCATGCCGCGGATCCGGTGGAGTTCAACGAACCCATCCACGTTGCGGTGGCGGCTCCACCTCAGCCACCG
ACGCAGATGCAAGCTGGCGTCAACATGAGCAGCAAGGAGGACAGTGGCCTCCCGCCGACAACCTCCGCCTTCGCCCTGAC
GGCGCGCTTGTCGTGCTCCACGTCCCGCCGCCGCAGAGCATCGCCGCGGGGCTCAACCCTGGACCCATCCCCTTCGGCGG
CCCGAGCGAGGAAAAAACCTCCGACAATGGAGCCGGAGCTCAAGCTCCTCCCCGACCCTGAGTTCCCACGTGCGTGGCTC
TGGCGATGTACACCTCTTTGGCGTGGTCGACGCATTAGGACCCCTCTGTCATTGGCTGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5073.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis