Browse Element(s) Details


OsAffx.5209.1.S1_at

Description tigr:9635.m00380
TID=OsAffx.5209.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0449010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04420Os.54102.1.S1_x_at9/117+1954422..1957966hypothetical protein
LOC_Os07g04420Os.53654.1.S1_at3/117+1954422..1957966hypothetical protein
LOC_Os07g04420Os.27698.1.A1_x_at1/117+1954422..1957966hypothetical protein
LOC_Os07g04430NANA7+1958813..1962780expressed protein
LOC_Os07g04440Os.49250.1.S1_at8/117+1963593..1964641expressed protein
LOC_Os07g04450Os.16140.1.S1_at10/117+1968074..1970246expressed protein
LOC_Os07g04460NANA7+1972628..1972867hypothetical protein
LOC_Os07g04470OsAffx.16080.1.S1_at10/117+1974591..1975788GRF zinc finger family protein
LOC_Os07g04480Os.49936.1.S1_at11/117+1976356..1979759SWIM zinc finger family protein, expressed
LOC_Os07g04490OsAffx.5209.1.S1_at10/117+1981923..1983107hypothetical protein
LOC_Os07g04500Os.9770.1.S1_at10/117+1983792..1986156expressed protein
LOC_Os07g04510OsAffx.31549.2.S1_x_at11/117+1987998..1989084TCP family transcription factor containing protein
LOC_Os07g04510OsAffx.31549.1.S1_x_at4/117+1987998..1989084TCP family transcription factor containing protein
LOC_Os07g04520OsAffx.28262.1.S1_x_at11/117+1990926..1992961Protein kinase domain containing protein, expressed
LOC_Os07g04520OsAffx.28262.1.S1_at11/117+1990926..1992961Protein kinase domain containing protein, expressed
LOC_Os07g04530Os.4742.1.S1_at11/117+1995047..2004298GYF domain containing protein, expressed
LOC_Os07g04530Os.4742.1.S2_at11/117+1995047..2004298GYF domain containing protein, expressed
LOC_Os07g04540OsAffx.28263.1.S1_at11/117+2004905..2005690hypothetical protein
LOC_Os07g04550Os.46529.1.S1_a_at11/117+2005963..2011228pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g04550Os.17736.1.S1_at1/117+2005963..2011228pleckstrin homology domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5209.1.S1_at--1048--7351Chr07:1982775..1982799 (25 bp)
GTGAGGTTCCATATGAAGGGTGATT
LOC_Os07g04490
OsAffx.5209.1.S1_at--975--2851Chr07:1982760..1982784 (25 bp)
AAGGGTGATTTTGTGACAGAAGGAA
LOC_Os07g04490
OsAffx.5209.1.S1_at--862--5891NONE
GAGCTATGTAGGTGAAACAGTTGAA
NONE
OsAffx.5209.1.S1_at--427--7891Chr07:1982109..1982133 (25 bp)
GGTTAAGACAGCACAGTTAGACATC
LOC_Os07g04490
OsAffx.5209.1.S1_at--843--1491Chr07:1982100..1982124 (25 bp)
AGCACAGTTAGACATCTTGGATGAT
LOC_Os07g04490
OsAffx.5209.1.S1_at--1063--6291Chr07:1982081..1982105 (25 bp)
GATGATGTGTTCTTTGTGGTAGAGA
LOC_Os07g04490
OsAffx.5209.1.S1_at--454--4731Chr07:1982069..1982093 (25 bp)
TTTGTGGTAGAGAGGTCCAACCCTA
LOC_Os07g04490
OsAffx.5209.1.S1_at--856--7971Chr07:1982019..1982043 (25 bp)
GGATGAAACCCCTTATGTTGACAGT
LOC_Os07g04490
OsAffx.5209.1.S1_at--803--5531Chr07:1982015..1982039 (25 bp)
GAAACCCCTTATGTTGACAGTCAAT
LOC_Os07g04490
OsAffx.5209.1.S1_at--430--5651Chr07:1982000..1982024 (25 bp)
GACAGTCAATATGATGACTCAATTG
LOC_Os07g04490
OsAffx.5209.1.S1_at--113--7891Chr07:1981953..1981977 (25 bp)
GGTTAGGATAAGGAGAGACAAGCAC
LOC_Os07g04490
Target Sequence 
GTGAGGTTCCATATGAAGGGTGATTTTGTGACAGAAGGAAGGGAAAAGAGCTATGTAGGTGAAACAGTTGAAATAGAGAA
GCATTTTAAAGAGGTGAAGAAGAAGGTTAAGACAGCACAGTTAGACATCTTGGATGATGTGTTCTTTGTGGTAGAGAGGT
CCAACCCTAGTGACAGACCAGCTGCAGATGAGGGGGATGAAACCCCTTATGTTGACAGTCAATATGATGACTCAATTGAA
GAAATTGGCAGTGATGGAGAGGTTAGGATAAGGAGAGACAAGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5209.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis