Browse Element(s) Details


OsAffx.5474.1.S1_at

Description tigr:9635.m02761
TID=OsAffx.5474.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2842011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28380OsAffx.25367.1.S1_at1/117+16588416..16591117retrotransposon, putative, centromere-specific
LOC_Os07g28390NANA7+16592594..16593306retrotransposon, putative, centromere-specific
LOC_Os07g28400Os.6610.1.S1_at11/117+16598389..16600285expressed protein
LOC_Os07g28410NANA7+16602976..16604470hypothetical protein
LOC_Os07g28420OsAffx.5474.1.S1_at11/117+16615957..16616662hypothetical protein
LOC_Os07g28430Os.5329.1.S1_at11/117+16620968..16623597expressed protein
LOC_Os07g28440Os.7357.1.S1_at11/117+16625927..16629216expressed protein
LOC_Os07g28450Os.46012.2.S1_x_at7/117+16641634..16645921retrotransposon protein, putative, unclassified
LOC_Os07g28450Os.46012.3.S1_x_at6/117+16641634..16645921retrotransposon protein, putative, unclassified
LOC_Os07g28450Os.27088.1.A1_x_at4/117+16641634..16645921retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5474.1.S1_at--595--4031Chr07:16616093..16616117 (25 bp)
CGTTCATCACCTCTGCGTGTATCTT
LOC_Os07g28420
OsAffx.5474.1.S1_at--801--1751Chr07:16616101..16616125 (25 bp)
ACCTCTGCGTGTATCTTCATTGTGG
LOC_Os07g28420
OsAffx.5474.1.S1_at--1126--4651Chr07:16616107..16616131 (25 bp)
GCGTGTATCTTCATTGTGGCAAGCG
LOC_Os07g28420
OsAffx.5474.1.S1_at--507--10151Chr07:16616112..16616136 (25 bp)
TATCTTCATTGTGGCAAGCGTGGGA
LOC_Os07g28420
OsAffx.5474.1.S1_at--962--5571Chr07:16616146..16616170 (25 bp)
GAAAGGGATGGTGACGCTCAATGCT
LOC_Os07g28420
OsAffx.5474.1.S1_at--886--811Chr07:16616153..16616177 (25 bp)
ATGGTGACGCTCAATGCTGGTCTCT
LOC_Os07g28420
OsAffx.5474.1.S1_at--1098--3011Chr07:16616165..16616189 (25 bp)
AATGCTGGTCTCTGAGGATCAAGAA
LOC_Os07g28420
OsAffx.5474.1.S1_at--81--8891Chr07:16616177..16616201 (25 bp)
TGAGGATCAAGAAGACTAGGGCTAT
LOC_Os07g28420
OsAffx.5474.1.S1_at--22--1071Chr07:16616559..16616583 (25 bp)
AGGGATCTATAGTAGTGACTGGTTT
LOC_Os07g28420
OsAffx.5474.1.S1_at--778--10171Chr07:16616566..16616590 (25 bp)
TATAGTAGTGACTGGTTTAGACATC
LOC_Os07g28420
OsAffx.5474.1.S1_at--883--7871Chr07:16616579..16616603 (25 bp)
GGTTTAGACATCAACTATCCAACTA
LOC_Os07g28420
Target Sequence 
CGTTCATCACCTCTGCGTGTATCTTCATTGTGGCAAGCGTGGGAGGGGGAGGAGAAAGGGATGGTGACGCTCAATGCTGG
TCTCTGAGGATCAAGAAGACTAGGGCTATGGGAGAGACAGAGATAAAGGGATCTATAGTAGTGACTGGTTTAGACATCAA
CTATCCAACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5474.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis