Browse Element(s) Details


OsAffx.5487.1.S1_at

Description tigr:9635.m03031
TID=OsAffx.5487.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to probable monooxygenase (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3096010/11CTF2A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30930OsAffx.16500.1.S1_at11/117+18307988..18309961pentatricopeptide, putative, expressed
LOC_Os07g30940Os.5232.1.A1_at11/117+18320091..18322980expressed protein
LOC_Os07g30950Os.54865.1.S1_at10/117+18327264..18329088Taxane 10-beta-hydroxylase, putative, expressed
LOC_Os07g30960OsAffx.5487.1.S1_at10/117+18330234..18332264CTF2A, putative, expressed
LOC_Os07g30970Os.146.1.S1_at11/117+18333178..18335793Nucleoside diphosphate kinase 1, putative, expressed
LOC_Os07g30980Os.9401.1.S1_at11/117+18336521..18349942UvrD/REP helicase family protein, putative, expressed
LOC_Os07g30990OsAffx.5488.1.S1_x_at11/117+18353306..18353945Ubiquitin, putative
LOC_Os07g31000NANA7+18356514..18356864expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5487.1.S1_at--182--4371Chr07:18331299..18331323 (25 bp)
CCACCCGTGTCTACTGGTTCATCTG
LOC_Os07g30960
OsAffx.5487.1.S1_at--1136--10531Chr07:18331282..18331306 (25 bp)
TTCATCTGCTTCAATCGACCAAGCC
LOC_Os07g30960
OsAffx.5487.1.S1_at--1083--10471Chr07:18331278..18331297 (20 bp)
TTCAATCGACCAAGCCCAGGGCCAA
LOC_Os07g30960
OsAffx.5487.1.S1_at--608--2671NONE
AAGCCCAGGGCCAAAGATCACGGAC
NONE
OsAffx.5487.1.S1_at--880--7371Chr07:18330677..18330701 (25 bp)
GTGATGCGCGACACCCCGGACGACG
LOC_Os07g30960
OsAffx.5487.1.S1_at--451--5811Chr07:18330656..18330680 (25 bp)
GACGCCGTGGTGAGGACGCCGCTGG
LOC_Os07g30960
OsAffx.5487.1.S1_at--540--4491Chr07:18330572..18330596 (25 bp)
GCCGGAGACGCGTGGCACCCCATGA
LOC_Os07g30960
OsAffx.5487.1.S1_at--940--1931Chr07:18330442..18330466 (25 bp)
ACGGCGAGGCTATGCGGGCGTACGA
LOC_Os07g30960
OsAffx.5487.1.S1_at--988--8611Chr07:18330313..18330337 (25 bp)
TGGTGATCCCGAGGCTGGTCAGGCT
LOC_Os07g30960
OsAffx.5487.1.S1_at--84--2171Chr07:18330271..18330295 (25 bp)
ACACCAACTTCGACTGTGGCCTGCT
LOC_Os07g30960
OsAffx.5487.1.S1_at--47--2531Chr07:18330266..18330290 (25 bp)
AACTTCGACTGTGGCCTGCTCGAGC
LOC_Os07g30960
Target Sequence 
CCACCCGTGTCTACTGGTTCATCTGCTTCAATCGACCAAGCCCAGGGCCAAAGATCACGGACCCGGCGGCGCTCAAGAGG
GAGGCGCTGGAGCTCGTCCGCGGGTGGCCGGAGGACCTCCTCGCCGTGATGCGCGACACCCCGGACGACGCCGTGGTGAG
GACGCCGCTGGTGGACCGGTGGCTGTGGCCGGTCCTTGCCCCACCGGCGTCGAGGGGCGGCGTGGTGCTGGCCGGAGACG
CGTGGCACCCCATGACGCCCAACCTCGGCCAGGGCGCCTGTTGCGCGCTCGAGGACGCCGTCGTCCTGGCGCGCCGCCTC
GCCACCGCCGCCGCGAGCGAGGGCGGCGAGGCGAGCTCGTACGGCGAGGCTATGCGGGCGTACGAGCGAGAGCGGTGGGG
GCGGGTGTTCCCGCTGACGGCGAGGGCGGGGCTCGTCGGCGCGCTGGTGCAGTGGGGGAACCCGGCGGTGTGCGCGGCGC
GCGACGGCGTGGTGATCCCGAGGCTGGTCAGGCTCGGCCCCTTCCTCGAGCACACCAACTTCGACTGTGGCCTGCTCGAG
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5487.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis