Browse Element(s) Details


OsAffx.5512.1.S1_at

Description tigr:9635.m03271
TID=OsAffx.5512.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AL161572 protein phosphatase 2C-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3323011/11Protein phosphatase 2C containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33210Os.56983.1.S1_at1/117+19836882..19840894expressed protein
LOC_Os07g33220Os.14331.1.S1_at11/117+19849290..19852778BNR/Asp-box repeat family protein, putative, expressed
LOC_Os07g33230OsAffx.5512.1.S1_at11/117+19857532..19859359Protein phosphatase 2C containing protein
LOC_Os07g33240Os.13599.1.S1_at11/117+19859915..19862826expressed protein
LOC_Os07g33250NANA7+19867227..19870498retrotransposon protein, putative, unclassified
LOC_Os07g33260NANA7+19871140..19877295transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5512.1.S1_at--226--8931Chr07:19857608..19857632 (25 bp)
TGACCTTCGGTTACCACCTCGTGGA
LOC_Os07g33230
OsAffx.5512.1.S1_at--849--6771Chr07:19857617..19857641 (25 bp)
GTTACCACCTCGTGGAGGGCAAGAC
LOC_Os07g33230
OsAffx.5512.1.S1_at--979--1931Chr07:19857647..19857671 (25 bp)
ACGGCATGGAGGACCTCCACGTCGC
LOC_Os07g33230
OsAffx.5512.1.S1_at--574--7571Chr07:19857960..19857984 (25 bp)
GGGCGCAGCAGCTATCCGTGGACCA
LOC_Os07g33230
OsAffx.5512.1.S1_at--778--2911Chr07:19858109..19858133 (25 bp)
AAGGAGCACATCAGCTCCGACCCGA
LOC_Os07g33230
OsAffx.5512.1.S1_at--967--5271Chr07:19859231..19859255 (25 bp)
GAATGTTTCTTACAGCGATTGGCAG
LOC_Os07g33230
OsAffx.5512.1.S1_at--820--9851Chr07:19859241..19859265 (25 bp)
TACAGCGATTGGCAGAATACGCAAT
LOC_Os07g33230
OsAffx.5512.1.S1_at--543--9951Chr07:19859258..19859282 (25 bp)
TACGCAATCTGTATCCATGGAGCCT
LOC_Os07g33230
OsAffx.5512.1.S1_at--60--851Chr07:19859274..19859298 (25 bp)
ATGGAGCCTCCATGGAACATAGGAA
LOC_Os07g33230
OsAffx.5512.1.S1_at--950--8211Chr07:19859295..19859319 (25 bp)
GGAATTTTCATGTTCACAGTTCACA
LOC_Os07g33230
OsAffx.5512.1.S1_at--437--711Chr07:19859304..19859328 (25 bp)
ATGTTCACAGTTCACACGTCCATTA
LOC_Os07g33230
Target Sequence 
TGACCTTCGGTTACCACCTCGTGGAGGGCAAGACGCCGCACGGCATGGAGGACCTCCACGTCGCCGAGTTCCGCCGCCTG
GACGACGGCAACGAGGACGGCGGCGACGGCGGGTCGACGGCGGTGACGGCCATCCTGATCAACGGCGAGACGCTGGCGGT
GGCGAACGTGGGGGACTCCCGCGCCGTGGCGTTCGACGTCCGCGCGGGGCGGGCGCAGCAGCTATCCGTGGACCACGAGC
CGCTCCGGGAGCGCGACGCCATCGAGCACTGCGGCGGGTTCGTGACGGAGATCCACGGCGACGTGCCGCGCGTCGACGCG
CAGCTGGCGACGTCGCGCGCGTTCGGCGACCGGCAGATCAAGGAGCACATCAGCTCCGACCCGAACGTGACCATCGAGGA
CGTCGGCGGGCGACGCCGGCGATGGTGGCACGGAGCTCGTCGTCCTCGCCAGCGACGGGGTGTGGAAGAATGTTTCTTAC
AGCGATTGGCAGAATACGCAATCTGTATCCATGGAGCCTCCATGGAACATAGGAATTTTCATGTTCACAGTTCACACGTC
CATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5512.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis