Browse Element(s) Details


OsAffx.5528.1.S1_at

Description tigr:9635.m03438
TID=OsAffx.5528.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3479011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34760OsAffx.16559.1.S1_at11/117+20824300..20825519expressed protein
LOC_Os07g34770NANA7+20826052..20832760transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g34780OsAffx.5527.1.S1_at11/117+20840925..20844298Ankyrin repeat domain protein 28, putative
LOC_Os07g34790OsAffx.5528.1.S1_at11/117+20848144..20849949hypothetical protein
LOC_Os07g34800Os.28943.1.S1_x_at1/117+20853335..20856642retrotransposon protein, putative, unclassified
LOC_Os07g34810NANA7+20857259..20863414transposon protein, putative, unclassified
LOC_Os07g34820OsAffx.5529.1.S1_at11/117+20865385..20866152transient receptor potential cation channel, subfamily N, member 1, putative
LOC_Os07g34830Os.51015.1.S1_at11/117+20872577..20875029ankyrin repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5528.1.S1_at--993--3171Chr07:20849435..20849459 (25 bp)
CAATACTGGCGAGCCGGTTTGCATT
LOC_Os07g34790
OsAffx.5528.1.S1_at--132--10731Chr07:20849453..20849477 (25 bp)
TTGCATTCCGAGCATTTGTCGTGAC
LOC_Os07g34790
OsAffx.5528.1.S1_at--271--8511Chr07:20849507..20849531 (25 bp)
TGGCAACCAGCTTCCTTATATACGG
LOC_Os07g34790
OsAffx.5528.1.S1_at--955--2291Chr07:20849538..20849562 (25 bp)
AAAGGAGATTCCACGCGGCCATCGT
LOC_Os07g34790
OsAffx.5528.1.S1_at--362--7031Chr07:20849568..20849592 (25 bp)
GTACAGCTTACTGGCATCTGGGTTG
LOC_Os07g34790
OsAffx.5528.1.S1_at--849--7511Chr07:20849666..20849690 (25 bp)
GTGGACTTGTCATCTTCGTCTATAT
LOC_Os07g34790
OsAffx.5528.1.S1_at--292--10191Chr07:20849686..20849710 (25 bp)
TATATGGTGTCTTCAGCTGCAGTCC
LOC_Os07g34790
OsAffx.5528.1.S1_at--1082--4311Chr07:20849737..20849761 (25 bp)
CCATTCTGTCTTGGGCTTTGGAAAA
LOC_Os07g34790
OsAffx.5528.1.S1_at--7--511Chr07:20849807..20849831 (25 bp)
ATCGACCGTCGAGCTTACTAGAATT
LOC_Os07g34790
OsAffx.5528.1.S1_at--141--6091Chr07:20849836..20849860 (25 bp)
GAGTCTCTATTCACGGGACCTTTGA
LOC_Os07g34790
OsAffx.5528.1.S1_at--605--991Chr07:20849869..20849893 (25 bp)
AGGAGGACATTGTTCCCTGTACTCA
LOC_Os07g34790
Target Sequence 
CAATACTGGCGAGCCGGTTTGCATTCCGAGCATTTGTCGTGACAGACACCATGGCCTTCCTCTGCTCCATCGTGGCAACC
AGCTTCCTTATATACGGTAGCGCAAAGGAGATTCCACGCGGCCATCGTTGGTGGTACAGCTTACTGGCATCTGGGTTGGT
GCCGTGGGGAGCTCAGTTCCTGATCGGCACGTTCGCGCTCGGGTTTCACCTTGTGCTCGGCTCGGCCAACCGTGGACTTG
TCATCTTCGTCTATATGGTGTCTTCAGCTGCAGTCCTCTTCTGTTTCCCGGGCATCTGGGGTCCATTCTGTCTTGGGCTT
TGGAAAACGATATGGCGACGAGCAGGGTGGAGAGGACTCATCAACATACACGATCGACCGTCGAGCTTACTAGAATTCTT
GGAGTCTCTATTCACGGGACCTTTGATGGATATTAGGAGGACATTGTTCCCTGTACTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5528.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis