Browse Element(s) Details


OsAffx.16559.1.S1_at

Description tigr:9635.m03435
TID=OsAffx.16559.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3476011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34710Os.53161.1.S1_x_at11/117+20801612..20803666Peroxidase 27 precursor, putative, expressed
LOC_Os07g34720OsAffx.16558.1.S1_at11/117+20805166..20805687Harpin-induced protein 1 containing protein
LOC_Os07g34730Os.14207.1.S1_at11/117+20806339..20810838Acyltransferase family protein, expressed
LOC_Os07g34740Os.27614.1.S1_at11/117+20811188..20816227expressed protein
LOC_Os07g34750OsAffx.28753.1.S1_at11/117+20817190..20820411hypothetical protein
LOC_Os07g34760OsAffx.16559.1.S1_at11/117+20824300..20825519expressed protein
LOC_Os07g34770NANA7+20826052..20832760transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g34780OsAffx.5527.1.S1_at11/117+20840925..20844298Ankyrin repeat domain protein 28, putative
LOC_Os07g34790OsAffx.5528.1.S1_at11/117+20848144..20849949hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16559.1.S1_at--756--1671Chr07:20824754..20824778 (25 bp)
AGCCGATCGCAGTGGCGCCTGCAGC
LOC_Os07g34760
OsAffx.16559.1.S1_at--593--1631Chr07:20824788..20824812 (25 bp)
AGCGGGCTGCCTTCTCGGAGTGACG
LOC_Os07g34760
OsAffx.16559.1.S1_at--538--7491Chr07:20824966..20824990 (25 bp)
GTGGTGGCCCGCCTCCTAGATACGC
LOC_Os07g34760
OsAffx.16559.1.S1_at--634--3591Chr07:20824981..20825005 (25 bp)
CTAGATACGCGCACCGGCGTGGCCG
LOC_Os07g34760
OsAffx.16559.1.S1_at--820--2651Chr07:20825087..20825111 (25 bp)
AAGCCGTCCGGCATGGCCATACCGA
LOC_Os07g34760
OsAffx.16559.1.S1_at--590--311Chr07:20825105..20825129 (25 bp)
ATACCGAGGTGGTGCATCTCCTCAT
LOC_Os07g34760
OsAffx.16559.1.S1_at--283--471Chr07:20825120..20825144 (25 bp)
ATCTCCTCATGTCAAGGGCGGGCGC
LOC_Os07g34760
OsAffx.16559.1.S1_at--1127--8331Chr07:20825145..20825169 (25 bp)
GGCTGAGCTGGCCTCCGTAGCATCC
LOC_Os07g34760
OsAffx.16559.1.S1_at--752--8451Chr07:20825153..20825177 (25 bp)
TGGCCTCCGTAGCATCCGACGACGG
LOC_Os07g34760
OsAffx.16559.1.S1_at--214--691Chr07:20825252..20825276 (25 bp)
ATGACGGGAGACGACGATCATCGGC
LOC_Os07g34760
OsAffx.16559.1.S1_at--266--1891Chr07:20825265..20825289 (25 bp)
ACGATCATCGGCGTCGTTCACTGGC
LOC_Os07g34760
Target Sequence 
AGCCGATCGCAGTGGCGCCTGCAGCGCGACACGGAGCGGGCTGCCTTCTCGGAGTGACGAGCAACGGGAACACGGCCCTG
CACCTCGTCGCCAGCCGCGGCCACGCCGAGCTCGCGGCGCTCATCCGCGTGAGGGCGCCCTCGCTCGTCGCCACGCGCAA
CCGGTGCCTCGACACGCCGCTCCACTGTGCGGCGAAGGCCGGGCACCGCGAGGTGGTGGCCCGCCTCCTAGATACGCGCA
CCGGCGTGGCCGAGGCTGAGGTGGAGTTGGCGGCGGCGGTGGCGGAGGCGGCTCTGCGGGTGAGGAACTGCCTGGGCGCC
ACCGTCCTGCACGAAGCCGTCCGGCATGGCCATACCGAGGTGGTGCATCTCCTCATGTCAAGGGCGGGCGCGGCTGAGCT
GGCCTCCGTAGCATCCGACGACGGCGTCTCGCCGTTGTACTTGGCGGCGACGACCGGCTCGGTGCGCATGGTCCAGGAGC
TGCTGCTTCGTCCGGCGGATGACGGGAGACGACGATCATCGGCGTCGTTCACTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16559.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis