Browse Element(s) Details


Os.27614.1.S1_at

Description gb:AK071504.1
DB_XREF= gi:32981527
TID=Os.27614.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27614 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023094A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023094A01, full insert sequence.
FL= gb:AK071504.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3474011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34690Os.57292.1.S1_at11/117+20788143..20789013expressed protein
LOC_Os07g34700NANA7+20794387..20796028retrotransposon protein, putative, unclassified
LOC_Os07g34710Os.53161.1.S1_x_at11/117+20801612..20803666Peroxidase 27 precursor, putative, expressed
LOC_Os07g34720OsAffx.16558.1.S1_at11/117+20805166..20805687Harpin-induced protein 1 containing protein
LOC_Os07g34730Os.14207.1.S1_at11/117+20806339..20810838Acyltransferase family protein, expressed
LOC_Os07g34740Os.27614.1.S1_at11/117+20811188..20816227expressed protein
LOC_Os07g34750OsAffx.28753.1.S1_at11/117+20817190..20820411hypothetical protein
LOC_Os07g34760OsAffx.16559.1.S1_at11/117+20824300..20825519expressed protein
LOC_Os07g34770NANA7+20826052..20832760transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g34780OsAffx.5527.1.S1_at11/117+20840925..20844298Ankyrin repeat domain protein 28, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27614.1.S1_at--630--5771Chr07:20815498..20815522 (25 bp)
GACGAACTTCCCGACATAGATCTTA
LOC_Os07g34740
Os.27614.1.S1_at--900--6151Chr07:20815533..20815557 (25 bp)
GAGGTTCTCAGCCATGTTCAATTCT
LOC_Os07g34740
Os.27614.1.S1_at--643--4451Chr07:20815745..20815769 (25 bp)
GCCTTTATGCGCAAGCAAGCTGGGA
LOC_Os07g34740
Os.27614.1.S1_at--206--7651Chr07:20815774..20815798 (25 bp)
GGGAGCACATGAACCATCTCTGGGA
LOC_Os07g34740
Os.27614.1.S1_at--117--6151Chr07:20815815..20815839 (25 bp)
GAGGTACATTGCCACCTGATGATGT
LOC_Os07g34740
Os.27614.1.S1_at--68--1771Chr07:20815828..20815852 (25 bp)
ACCTGATGATGTGCCTACCGATACT
LOC_Os07g34740
Os.27614.1.S1_at--319--4451Chr07:20815840..20815864 (25 bp)
GCCTACCGATACTCATGACCAGAAA
LOC_Os07g34740
Os.27614.1.S1_at--631--5551Chr07:20815861..20815885 (25 bp)
GAAACCTGATGGCACATCCACGGAG
LOC_Os07g34740
Os.27614.1.S1_at--1065--2391Chr07:20815893..20815917 (25 bp)
AAACAATGTCTGCAGTCAAGTCACT
LOC_Os07g34740
Os.27614.1.S1_at--754--2351Chr07:20815970..20815994 (25 bp)
AAAGCTTTGCTTTACCCTGATGACC
LOC_Os07g34740
Os.27614.1.S1_at--660--10351Chr07:20816069..20816093 (25 bp)
TTTATGTTTGCTACCTACCTATGAA
LOC_Os07g34740
Target Sequence 
GACGAACTTCCCGACATAGATCTTAGCAAAGATGAGAGGTTCTCAGCCATGTTCAATTCTCATTNGTTTGCGGTGGATCC
TACTGATCCCCAGTACAAAAGGAGTGCGGCCTTTATGCGCAAGCAAGCTGGGATAAAGGGAGCACATGAACCATCTCTGG
GAGGTAGAGGTAGTGGTAGAGGTACATTGCCACCTGATGATGTGCCTACCGATACTCATGACCAGAAACCTGATGGCACA
TCCACGGAGAAGCTGGAAACAATGTCTGCAGTCAAGTCACTAAAACGGAAGCTTACTGCATTAAAAAACACAAGCAAGAG
TGACCGATAGAGAAAAGCTTTGCTTTACCCTGATGACCAATGAACANGCTTTTTTTTTTTATTTGTCTATGACGAGAGTT
ATTTTGGCTTTAGAATAGTTTTTAGGTATGTTATTTATGTTTGCTACCTACCTATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27614.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis