Browse Element(s) Details


Os.57292.1.S1_at

Description gb:AK111249.1
DB_XREF= gi:32996458
TID=Os.57292.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57292 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-180-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-180-D10, full insert sequence.
FL= gb:AK111249.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3469011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34640Os.27195.1.S1_at10/117+20763084..20767891expressed protein
LOC_Os07g34650Os.27798.1.S1_a_at11/117+20767406..20770653expressed protein
LOC_Os07g34660OsAffx.28751.1.S1_x_at11/117+20779138..20779443hypothetical protein
LOC_Os07g34670OsAffx.16557.1.S1_at11/117+20781337..20783022Peroxidase 1 precursor, putative, expressed
LOC_Os07g34680OsAffx.28752.1.S1_at11/117+20783811..20784690hypothetical protein
LOC_Os07g34690Os.57292.1.S1_at11/117+20788143..20789013expressed protein
LOC_Os07g34700NANA7+20794387..20796028retrotransposon protein, putative, unclassified
LOC_Os07g34710Os.53161.1.S1_x_at11/117+20801612..20803666Peroxidase 27 precursor, putative, expressed
LOC_Os07g34720OsAffx.16558.1.S1_at11/117+20805166..20805687Harpin-induced protein 1 containing protein
LOC_Os07g34730Os.14207.1.S1_at11/117+20806339..20810838Acyltransferase family protein, expressed
LOC_Os07g34740Os.27614.1.S1_at11/117+20811188..20816227expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57292.1.S1_at--686--891Chr07:20788641..20788665 (25 bp)
AGGCGCGTGAAGATCCGGATGACCA
LOC_Os07g34690
Os.57292.1.S1_at--844--4011Chr07:20788561..20788585 (25 bp)
CGTCGTCGCGGAGATCATGAGCATG
LOC_Os07g34690
Os.57292.1.S1_at--728--6431Chr07:20788549..20788573 (25 bp)
GATCATGAGCATGGGCGACGTGCAC
LOC_Os07g34690
Os.57292.1.S1_at--636--9411Chr07:20788384..20788408 (25 bp)
TCGTCGGATGGATCGATCATCTGGA
LOC_Os07g34690
Os.57292.1.S1_at--784--1311Chr07:20788360..20788384 (25 bp)
AGATGGACGGTGGATGTTTCTTCAC
LOC_Os07g34690
Os.57292.1.S1_at--894--6831Chr07:20788345..20788369 (25 bp)
GTTTCTTCACCGATTTTGCATGCAT
LOC_Os07g34690
Os.57292.1.S1_at--49--4291Chr07:20788315..20788339 (25 bp)
CCTGCCTGTTTGTTTTGGATCTTGT
LOC_Os07g34690
Os.57292.1.S1_at--149--6871Chr07:20788292..20788316 (25 bp)
GTTTGTATCTTTTCTTTGCTCTAGT
LOC_Os07g34690
Os.57292.1.S1_at--131--972Chr11:23535215..23535306 (24 bp)
AGGACGTACGTATCATGCTATATTA
NONE
Os.57292.1.S1_at--669--3731Chr07:20788204..20788228 (25 bp)
CTAATAGATGTGTACGCGACTACGC
LOC_Os07g34690
Os.57292.1.S1_at--292--5711Chr07:20788187..20788211 (25 bp)
GACTACGCGTGCACATGTACATTTT
LOC_Os07g34690
Target Sequence 
AGGCGCGTGAAGATCCGGATGACCAAGGGGCAGCTGCGGCGGCTGCTGGCCGGCGCCGGGAGGGGGGCGGCCGTCGAGGA
CGTCGTCGCGGAGATCATGAGCATGGGCGACGTGCACGTCGAGCCCGTGAAGGCGGAGGAGGGCGGCGGCGGCCGCCGGC
CGCCGCCGTCGCCGTCCAAGCTGGAGCCGATACAGGAAGACATGGACGAGTAGCAGGAGCAGCCATGGAGGAGGATATGA
TGGAGATGAGCGTGAGATCGTCGGATGGATCGATCATCTGGAGATGGACGGTGGATGTTTCTTCACCGATTTTGCATGCA
TGCTGGCCTGCCTGTTTGTTTTGGATCTTGTTTGTATCTTTTCTTTGCTCTAGTTAAGTTTTGTAGGACGTACGTATCAT
GCTATATTAGAGGTAGAAATTAGGGGATATGTATATACTAATAGATGTGTACGCGACTACGCGTGCACATGTACATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57292.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis