Browse Element(s) Details


OsAffx.28752.1.S1_at

Description tigr:9635.m03426
TID=OsAffx.28752.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3468011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34630OsAffx.16556.1.S1_at11/117+20760328..20761107hypothetical protein
LOC_Os07g34640Os.27195.1.S1_at10/117+20763084..20767891expressed protein
LOC_Os07g34650Os.27798.1.S1_a_at11/117+20767406..20770653expressed protein
LOC_Os07g34660OsAffx.28751.1.S1_x_at11/117+20779138..20779443hypothetical protein
LOC_Os07g34670OsAffx.16557.1.S1_at11/117+20781337..20783022Peroxidase 1 precursor, putative, expressed
LOC_Os07g34680OsAffx.28752.1.S1_at11/117+20783811..20784690hypothetical protein
LOC_Os07g34690Os.57292.1.S1_at11/117+20788143..20789013expressed protein
LOC_Os07g34700NANA7+20794387..20796028retrotransposon protein, putative, unclassified
LOC_Os07g34710Os.53161.1.S1_x_at11/117+20801612..20803666Peroxidase 27 precursor, putative, expressed
LOC_Os07g34720OsAffx.16558.1.S1_at11/117+20805166..20805687Harpin-induced protein 1 containing protein
LOC_Os07g34730Os.14207.1.S1_at11/117+20806339..20810838Acyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28752.1.S1_at--527--1051Chr07:20783855..20784095 (25 bp)
AGGTGGTGCTCCGTCTATGACCACG
LOC_Os07g34680
OsAffx.28752.1.S1_at--808--5051Chr07:20784129..20784153 (25 bp)
GCAGCAGTGACTTGGCGAGCTCCGA
LOC_Os07g34680
OsAffx.28752.1.S1_at--1052--7711Chr07:20784192..20784216 (25 bp)
GGTGGTCGTCGATATCTTGGTGACA
LOC_Os07g34680
OsAffx.28752.1.S1_at--366--2131Chr07:20784214..20784268 (25 bp)
ACAGGGCCGGGCTAATGATAAGGAT
LOC_Os07g34680
OsAffx.28752.1.S1_at--942--991Chr07:20784264..20784288 (25 bp)
AGGATGATGGCAACGGAGGTTCTCA
LOC_Os07g34680
OsAffx.28752.1.S1_at--6--5411Chr07:20784309..20784454 (25 bp)
GAAGCTGCCACGAGCTACGGTGAGT
LOC_Os07g34680
OsAffx.28752.1.S1_at--949--9411Chr07:20784497..20784521 (25 bp)
TCGTGACGCACTATGGGCGTTCAAA
LOC_Os07g34680
OsAffx.28752.1.S1_at--428--10511Chr07:20784516..20784540 (25 bp)
TTCAAAATGCGGCAGCGGCGTAAGT
LOC_Os07g34680
OsAffx.28752.1.S1_at--390--10411Chr07:20784543..20784567 (25 bp)
TTTTGGACAGCGACAGAGGACATTA
LOC_Os07g34680
OsAffx.28752.1.S1_at--586--3591Chr07:20784563..20784587 (25 bp)
CATTAGGCATAGCAGTTGGCAGCAT
LOC_Os07g34680
OsAffx.28752.1.S1_at--816--7831Chr07:20784630..20784654 (25 bp)
GGTAGCACGGACTAGTTCTGTTTCT
LOC_Os07g34680
Target Sequence 
AGGTGGTGCTCCGTCTATGACCACGGCGGCGAAGGTTCTCGATGGCGGCGTCCTAGGGGCAGCAGTGACTTGGCGAGCTC
CGACGCCCCGTTCTGTTCACGGCCAAGCGAGGGTGGGGGATGGTGGTCGTCGATATCTTGGTGACAGGGCCGGGCTAATG
ATAAGGATGATGGCAACGGAGGTTCTCAGTGGCGGCGTCCTAGAGGGGGAAGCTGCCACGAGCTACGGTGAGTTCGATGG
TGTGCGGAAGACGGTGGTAACGCAGCAAGGCGGCTTCGTGACGCACTATGGGCGTTCAAAATGCGGCAGCGGCGTAAGTG
GTTTTGGACAGCGACAGAGGACATTAGGCATAGCAGTTGGCAGCATATGTTGGTTGAGTTCTACAGAGACGGAGATGGTG
CGGCAACGGGTAGCACGGACTAGTTCTGTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28752.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis