Browse Element(s) Details


Os.27798.1.S1_a_at

Description gb:AK099533.1
DB_XREF= gi:32984742
TID=Os.27798.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27798 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013031M18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013031M18, full insert sequence.
FL= gb:AK099533.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3465011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34598Os.9987.1.S1_at11/117+20737812..20747764Tyrosyl-DNA phosphodiesterase family protein, expressed
LOC_Os07g34610Os.10487.1.S1_at10/117+20747982..20750138Oral cancer overexpressed protein 1 homolog, putative, expressed
LOC_Os07g34620Os.7660.1.S1_at11/117+20750572..20752817expressed protein
LOC_Os07g34630OsAffx.16556.1.S1_at11/117+20760328..20761107hypothetical protein
LOC_Os07g34640Os.27195.1.S1_at10/117+20763084..20767891expressed protein
LOC_Os07g34650Os.27798.1.S1_a_at11/117+20767406..20770653expressed protein
LOC_Os07g34660OsAffx.28751.1.S1_x_at11/117+20779138..20779443hypothetical protein
LOC_Os07g34670OsAffx.16557.1.S1_at11/117+20781337..20783022Peroxidase 1 precursor, putative, expressed
LOC_Os07g34680OsAffx.28752.1.S1_at11/117+20783811..20784690hypothetical protein
LOC_Os07g34690Os.57292.1.S1_at11/117+20788143..20789013expressed protein
LOC_Os07g34700NANA7+20794387..20796028retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27798.1.S1_a_at--896--6351Chr07:20769416..20769440 (25 bp)
GATCCCCGGAGGGTGGTCTTCTTCT
LOC_Os07g34650
Os.27798.1.S1_a_at--853--8171Chr07:20767857..20767881 (25 bp)
GGAACGTTGATCCTGCTTTACTTCA
LOC_Os07g34650
Os.27798.1.S1_a_at--127--10351Chr07:20767841..20767865 (25 bp)
TTTACTTCACACTCTCCATGAGCAA
LOC_Os07g34650
Os.27798.1.S1_a_at--415--3951Chr07:20767792..20767816 (25 bp)
CGGCAGCAGCGATGCTCGGTGAAAC
LOC_Os07g34650
Os.27798.1.S1_a_at--297--7331Chr07:20767774..20767798 (25 bp)
GTGAAACGCCGGCTGTTGAAACTGA
LOC_Os07g34650
Os.27798.1.S1_a_at--823--6711Chr07:20767732..20767756 (25 bp)
GTTCTCAAACCTCAATGCAATCTGT
LOC_Os07g34650
Os.27798.1.S1_a_at--490--6671Chr07:20767693..20767717 (25 bp)
GTTGCTACAAAGACCCAGGCATCAA
LOC_Os07g34650
Os.27798.1.S1_a_at--605--8591Chr07:20767574..20767598 (25 bp)
TGGTAGTTGCATTCTCTTCTCTGTT
LOC_Os07g34650
Os.27798.1.S1_a_at--702--9511Chr07:20767557..20767581 (25 bp)
TCTCTGTTGCTGTCATGATTTCTTC
LOC_Os07g34650
Os.27798.1.S1_a_at--633--6471Chr07:20767467..20767491 (25 bp)
GATACTAGATTTTTCATCCTTGATG
LOC_Os07g34650
Os.27798.1.S1_a_at--784--571Chr07:20767452..20767476 (25 bp)
ATCCTTGATGTTGTTGCAGACACAC
LOC_Os07g34650
Target Sequence 
GATCCCCGGAGGGTGGTCTTCTTCTTCGCCACACTGTCAAGCGTTGGAACGTTGATCCTGCTTTACTTCACACTCTCCAT
GAGCAAGATGGGCGGCGACAGCGGCGGCGGCGGCAGCAGCGATGCTCGGTGAAACGCCGGCTGTTGAAACTGAAGAAAAA
TTTTCGTTTTGTTCTCAAACCTCAATGCAATCTGTAAAGGAGGCATGATGTTGCTACAAAGACCCAGGCATCAAAAAAAC
TGATGCTCTTCTAAGGGTCAAGGAAGAATATAGAGTGAATGGCAGTGAAGAGATCAGGCTGAATGGGGTCTGATGGTGAA
GTATGCGATGGTAGTTGCATTCTCTTCTCTGTTGCTGTCATGATTTCTTCAGTTATNTTTCTCTTCTTTTTTTTGCANAA
AAAGGGGNTACATCATNCATGTCNCTTTGAAGCGANGATACTAGATTTTTCATCCTTGATGTTGTTGCAGACACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27798.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis