Browse Element(s) Details


Os.7660.1.S1_at

Description gb:AK107269.1
DB_XREF= gi:32992478
TID=Os.7660.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7660 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-H09, full insert sequence.
FL= gb:AK107269.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3462011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34580Os.9967.2.S1_x_at11/117+20727712..20728562xyloglucan endotransglucosylase/hydrolase protein 8 precursor, putative, expressed
LOC_Os07g34589Os.7945.1.S1_at11/117+20731461..20733636Protein translation factor SUI1 homolog, putative, expressed
LOC_Os07g34589Os.7945.1.S1_s_at11/117+20731461..20733636Protein translation factor SUI1 homolog, putative, expressed
LOC_Os07g34589Os.11101.1.S1_a_at1/117+20731461..20733636Protein translation factor SUI1 homolog, putative, expressed
LOC_Os07g34589Os.24594.1.A1_s_at1/117+20731461..20733636Protein translation factor SUI1 homolog, putative, expressed
LOC_Os07g34598Os.9987.1.S1_at11/117+20737812..20747764Tyrosyl-DNA phosphodiesterase family protein, expressed
LOC_Os07g34610Os.10487.1.S1_at10/117+20747982..20750138Oral cancer overexpressed protein 1 homolog, putative, expressed
LOC_Os07g34620Os.7660.1.S1_at11/117+20750572..20752817expressed protein
LOC_Os07g34630OsAffx.16556.1.S1_at11/117+20760328..20761107hypothetical protein
LOC_Os07g34640Os.27195.1.S1_at10/117+20763084..20767891expressed protein
LOC_Os07g34650Os.27798.1.S1_a_at11/117+20767406..20770653expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7660.1.S1_at--657--3951Chr07:20751081..20751105 (25 bp)
CGGAAGGGCCCGACATGCTGACGAT
LOC_Os07g34620
Os.7660.1.S1_at--215--2111Chr07:20751069..20751093 (25 bp)
ACATGCTGACGATGCCCAGGGTGTG
LOC_Os07g34620
Os.7660.1.S1_at--720--911Chr07:20750887..20750911 (25 bp)
AGGCTCTTCACCGTGCACGAGTGCG
LOC_Os07g34620
Os.7660.1.S1_at--476--3851Chr07:20750803..20750827 (25 bp)
CTGACGCGGCATGCCGTGTTCGAGA
LOC_Os07g34620
Os.7660.1.S1_at--717--1891Chr07:20750772..20750796 (25 bp)
ACGGCGAGGACCTGAACCCCATGGG
LOC_Os07g34620
Os.7660.1.S1_at--105--2611Chr07:20750758..20750782 (25 bp)
AACCCCATGGGCATCGTCGAGACCG
LOC_Os07g34620
Os.7660.1.S1_at--205--4092Chr07:20314603..20314622 (20 bp)
CGACCATGTATGTCGCCAGCCATGC
NONE
Os.7660.1.S1_at--621--3991Chr07:20750650..20750674 (25 bp)
CGTGGCGTGTAGTTCGGCTGATAAC
LOC_Os07g34620
Os.7660.1.S1_at--271--10051Chr07:20750641..20750665 (25 bp)
TAGTTCGGCTGATAACTGTGGCGGT
LOC_Os07g34620
Os.7660.1.S1_at--974--671Chr07:20750615..20750639 (25 bp)
ATGACTGATGAGGAATTCGCTCTGG
LOC_Os07g34620
Os.7660.1.S1_at--68--10651Chr07:20750600..20750624 (25 bp)
TTCGCTCTGGAATTTCCTCCTGAAA
LOC_Os07g34620
Target Sequence 
CGGAAGGGCCCGACATGCTGACGATGCCCAGGGTGTGCGTCGCGTACGCGGTGGNACATGGCGGCGAGGNACGATCGCGC
TGTCGAGGCTGGGCGCGCGCGCGCTGTTCATGGGCGACGACCGNGCGGTCTGGGCGTCGCCGGGGGCGTTCTCCCCGGGC
GTCGCGGCGGACACCGTCTACGCCGGCCGCCCCAACAGGCTCTTCACCGTGCACGAGTGCGGCATCGAGGCCGACCGCCC
GCTGACGGTCGTGCTCCACACGCACGGCCTCGTGAGCNGGGCTGACGCGGCATGCCGTGTTCGAGAGCGACGACGGCGAG
GACCTGAACCCCATGGGCATCGTCGAGACCGTCNCCAGCTACGTCGCCAGCGACCGCGGCGGCGCGGCGCGCCCGACCAT
GTATGTCGCCAGCCATGCCCGCCGCGGCCGTGGCCGTGGCGTGTAGTTCGGCTGATAACTGTGGCGGTGATGACTGATGA
GGAATTCGCTCTGGAATTTCCTCCTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7660.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis