Browse Element(s) Details


Os.9967.2.S1_x_at

Description gb:AK111340.1
DB_XREF= gi:32996549
TID=Os.9967.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9967 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-F07, full insert sequence.
FL= gb:AK111340.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3458011/11xyloglucan endotransglucosylase/hydrolase protein 8 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34540OsAffx.28748.1.S1_at10/117+20705661..20707120hypothetical protein
LOC_Os07g34550NANA7+20711674..20715734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g34560NANA7+20719250..20719540hypothetical protein
LOC_Os07g34570Os.12767.1.S1_a_at11/117+20722887..20724380Thiazole biosynthetic enzyme 1-1, chloroplast precursor, putative, expressed
LOC_Os07g34570OsAffx.29087.1.S1_x_at1/117+20722887..20724380Thiazole biosynthetic enzyme 1-1, chloroplast precursor, putative, expressed
LOC_Os07g34580Os.9967.2.S1_x_at11/117+20727712..20728562xyloglucan endotransglucosylase/hydrolase protein 8 precursor, putative, expressed
LOC_Os07g34589Os.7945.1.S1_at11/117+20731461..20733636Protein translation factor SUI1 homolog, putative, expressed
LOC_Os07g34589Os.7945.1.S1_s_at11/117+20731461..20733636Protein translation factor SUI1 homolog, putative, expressed
LOC_Os07g34589Os.11101.1.S1_a_at1/117+20731461..20733636Protein translation factor SUI1 homolog, putative, expressed
LOC_Os07g34589Os.24594.1.A1_s_at1/117+20731461..20733636Protein translation factor SUI1 homolog, putative, expressed
LOC_Os07g34598Os.9987.1.S1_at11/117+20737812..20747764Tyrosyl-DNA phosphodiesterase family protein, expressed
LOC_Os07g34610Os.10487.1.S1_at10/117+20747982..20750138Oral cancer overexpressed protein 1 homolog, putative, expressed
LOC_Os07g34620Os.7660.1.S1_at11/117+20750572..20752817expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016762molecular_functionxyloglucan:xyloglucosyl transferase activity
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9967.2.S1_x_at--194--6651Chr07:20727867..20727891 (25 bp)
GTTGACGGCGGCGATGATTTTTGCT
LOC_Os07g34580
Os.9967.2.S1_x_at--254--731Chr07:20727880..20727904 (25 bp)
ATGATTTTTGCTGTTGCTGTGTGCG
LOC_Os07g34580
Os.9967.2.S1_x_at--513--3891Chr07:20727896..20727920 (25 bp)
CTGTGTGCGGTTTCTGCTTCAGTGG
LOC_Os07g34580
Os.9967.2.S1_x_at--546--4591Chr07:20727953..20727977 (25 bp)
GCGACAACTTCGAGATCACCGGAGC
LOC_Os07g34580
Os.9967.2.S1_x_at--652--1771Chr07:20727970..20727994 (25 bp)
ACCGGAGCCGAGGATCACGTCAAGA
LOC_Os07g34580
Os.9967.2.S1_x_at--104--8591Chr07:20728015..20728039 (25 bp)
TGGTACCTCTACCTCGACAACAAGA
LOC_Os07g34580
Os.9967.2.S1_x_at--65--5611Chr07:20728030..20728132 (25 bp)
GACAACAAGACTGGCGTCGGGTTCC
LOC_Os07g34580
Os.9967.2.S1_x_at--1154--9891Chr07:20728216..20728331 (25 bp)
TACTACATGTGCTCCGACGTGGACG
LOC_Os07g34580
Os.9967.2.S1_x_at--911--1291Chr07:20728437..20728461 (25 bp)
AGATGCGCCACTCGCTGTGGTTCGA
LOC_Os07g34580
Os.9967.2.S1_x_at--468--8171Chr07:20728497..20728521 (25 bp)
GGAACCCCAAGCAGATCGTGTAAGT
LOC_Os07g34580
Os.9967.2.S1_x_at--1149--7051Chr07:20728538..20728562 (25 bp)
GTAATCAAGCTTCTAGTTGTTTCAA
LOC_Os07g34580
Target Sequence 
GTTGACGGCGGCGATGATTTTTGCTGTTGCTGTGTGCGGTTTCTGCTTCAGTGGGGCGTCGGCGGCGGCGGCAGCGCCGA
CGTNTCGGCGACAACTTCGAGATCACCGGAGCCGAGGATCACGTCAAGACCTCCGCCGACGGCCAGACGTGGTACCTCTA
CCTCGACAACAAGACTGGCGTCGGGTTCCAGACGAAGGAGAGGTATCTCTTNCGGGTGGTTCAGCATGAACCTCAAGCTC
GCCGGCAACGACTCCGCCGGCGTCGTCACCGCCTACTACATGTGCTCCGACGTGGACGCGGCGCCGNANCNNNACGAGNT
GGACTTCGAGTTCCTGGGGAACCGGACGGGTGANCCNNNNNNNNNCNNNNCNANNNNNNNCNNNNGNNGNNNNNGNGGCC
GGGAGATGCGCCACTCGCTGTGGTTCGACCCCACCGCCGACTTCCACTCCTACTCCATCCTCTGGAACCCCAAGCAGATC
GTGTAAGTGATCAACCGAACAATAGTAATCAAGCTTCTAGTTGTTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9967.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis