Browse Element(s) Details


OsAffx.28748.1.S1_at

Description tigr:9635.m03412
TID=OsAffx.28748.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3454010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34510Os.51294.1.S1_at3/117+20679460..20689273retrotransposon protein, putative, unclassified
LOC_Os07g34520Os.22277.1.S1_at11/117+20689392..20691827Isocitrate lyase, putative, expressed
LOC_Os07g34530NANA7+20702398..20702604hypothetical protein
LOC_Os07g34540OsAffx.28748.1.S1_at10/117+20705661..20707120hypothetical protein
LOC_Os07g34550NANA7+20711674..20715734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g34560NANA7+20719250..20719540hypothetical protein
LOC_Os07g34570Os.12767.1.S1_a_at11/117+20722887..20724380Thiazole biosynthetic enzyme 1-1, chloroplast precursor, putative, expressed
LOC_Os07g34570OsAffx.29087.1.S1_x_at1/117+20722887..20724380Thiazole biosynthetic enzyme 1-1, chloroplast precursor, putative, expressed
LOC_Os07g34580Os.9967.2.S1_x_at11/117+20727712..20728562xyloglucan endotransglucosylase/hydrolase protein 8 precursor, putative, expressed
LOC_Os07g34589Os.7945.1.S1_at11/117+20731461..20733636Protein translation factor SUI1 homolog, putative, expressed
LOC_Os07g34589Os.7945.1.S1_s_at11/117+20731461..20733636Protein translation factor SUI1 homolog, putative, expressed
LOC_Os07g34589Os.11101.1.S1_a_at1/117+20731461..20733636Protein translation factor SUI1 homolog, putative, expressed
LOC_Os07g34589Os.24594.1.A1_s_at1/117+20731461..20733636Protein translation factor SUI1 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28748.1.S1_at--788--3191Chr07:20706923..20706947 (25 bp)
CAATCCCAAGATATGCCTGACGGCT
LOC_Os07g34540
OsAffx.28748.1.S1_at--1147--10111Chr07:20706912..20706936 (25 bp)
TATGCCTGACGGCTCAGCATTTGGA
LOC_Os07g34540
OsAffx.28748.1.S1_at--510--4831Chr07:20706901..20706925 (25 bp)
GCTCAGCATTTGGAGGTGCTCGTAA
LOC_Os07g34540
OsAffx.28748.1.S1_at--944--6071NONE
GAGTTTACAAGTCAGCGCAGGTACA
NONE
OsAffx.28748.1.S1_at--71--10011Chr07:20706315..20706339 (25 bp)
TAGCGGAGAAAAGCCGTGCGGCACC
LOC_Os07g34540
OsAffx.28748.1.S1_at--517--3551Chr07:20706267..20706291 (25 bp)
CATCTGCGCCTTGCGAGATGCCAAG
LOC_Os07g34540
OsAffx.28748.1.S1_at--154--5171Chr07:20706050..20706258 (25 bp)
GCAAGCACATGCAGGGTCCGGTTCT
LOC_Os07g34540
OsAffx.28748.1.S1_at--786--5011Chr07:20706040..20706062 (23 bp)
GCAGGGTCCGGTTCTAATTTTTATG
LOC_Os07g34540
OsAffx.28748.1.S1_at--543--10431Chr07:20706020..20706044 (25 bp)
TTATGTTTCCAAAACCAGACCGCGG
LOC_Os07g34540
OsAffx.28748.1.S1_at--103--1731Chr07:20706007..20706031 (25 bp)
ACCAGACCGCGGCACAAGATATATA
LOC_Os07g34540
OsAffx.28748.1.S1_at--875--10191Chr07:20705988..20706012 (25 bp)
TATATAGGGTCCAATCCGTTGTCCG
LOC_Os07g34540
Target Sequence 
CAATCCCAAGATATGCCTGACGGCTCAGCATTTGGAGGTGCTCGTAATGATTGGGTTTGTATGTGTGAGTTTACAAGTCA
GCGCAGGTACATAGCGGAGAAAAGCCGTGCGGCACCAGGCCCAAGCTCGCATGGCCTTGCATCTGCGCCTTGCGAGATGC
CAAGCCCACCCTGCAAGCACATGCAGGGTCCGGTTCTAATTTTTATGTTTCCAAAACCAGACCGCGGCACAAGATATATA
GGGTCCAATCCGTTGTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28748.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis