Browse Element(s) Details


Os.10487.1.S1_at

Description gb:AK109327.1
DB_XREF= gi:32994536
TID=Os.10487.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10487 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-H10, full insert sequence.
FL= gb:AK109327.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3461010/11Oral cancer overexpressed protein 1 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34570Os.12767.1.S1_a_at11/117+20722887..20724380Thiazole biosynthetic enzyme 1-1, chloroplast precursor, putative, expressed
LOC_Os07g34570OsAffx.29087.1.S1_x_at1/117+20722887..20724380Thiazole biosynthetic enzyme 1-1, chloroplast precursor, putative, expressed
LOC_Os07g34580Os.9967.2.S1_x_at11/117+20727712..20728562xyloglucan endotransglucosylase/hydrolase protein 8 precursor, putative, expressed
LOC_Os07g34589Os.7945.1.S1_at11/117+20731461..20733636Protein translation factor SUI1 homolog, putative, expressed
LOC_Os07g34589Os.7945.1.S1_s_at11/117+20731461..20733636Protein translation factor SUI1 homolog, putative, expressed
LOC_Os07g34589Os.11101.1.S1_a_at1/117+20731461..20733636Protein translation factor SUI1 homolog, putative, expressed
LOC_Os07g34589Os.24594.1.A1_s_at1/117+20731461..20733636Protein translation factor SUI1 homolog, putative, expressed
LOC_Os07g34598Os.9987.1.S1_at11/117+20737812..20747764Tyrosyl-DNA phosphodiesterase family protein, expressed
LOC_Os07g34610Os.10487.1.S1_at10/117+20747982..20750138Oral cancer overexpressed protein 1 homolog, putative, expressed
LOC_Os07g34620Os.7660.1.S1_at11/117+20750572..20752817expressed protein
LOC_Os07g34630OsAffx.16556.1.S1_at11/117+20760328..20761107hypothetical protein
LOC_Os07g34640Os.27195.1.S1_at10/117+20763084..20767891expressed protein
LOC_Os07g34650Os.27798.1.S1_a_at11/117+20767406..20770653expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10487.1.S1_at--765--8111Chr07:20749577..20749601 (25 bp)
GGACGTCGTTGGTTTCAATTGATCA
LOC_Os07g34610
Os.10487.1.S1_at--1157--2791Chr07:20749601..20749625 (25 bp)
AAGATGCATTCTCAGCTCGGGTCAG
LOC_Os07g34610
Os.10487.1.S1_at--640--5951Chr07:20749636..20749660 (25 bp)
GAGCAACTAGCTGCACTGTTGAGAA
LOC_Os07g34610
Os.10487.1.S1_at--49--5971Chr07:20749656..20749680 (25 bp)
GAGAAGCTATCCGTTGTCGAACCCA
LOC_Os07g34610
Os.10487.1.S1_at--1087--3011NONE
AATGCTGCTATATTACTGTGTTTCT
NONE
Os.10487.1.S1_at--222--10431Chr07:20749942..20749966 (25 bp)
TTATGAAGGCCACCGGGATCACAGT
LOC_Os07g34610
Os.10487.1.S1_at--657--5831Chr07:20749970..20749994 (25 bp)
GACCTGAAAGCCTGTATCTGAGTAT
LOC_Os07g34610
Os.10487.1.S1_at--732--5031Chr07:20750020..20750044 (25 bp)
GCAGTTCTGGACTCATCTTGTTTTT
LOC_Os07g34610
Os.10487.1.S1_at--155--10811Chr07:20750037..20750061 (25 bp)
TTGTTTTTGATCCTTAGTCCTGCTT
LOC_Os07g34610
Os.10487.1.S1_at--683--7251Chr07:20750053..20750077 (25 bp)
GTCCTGCTTTACTTACCACATATGA
LOC_Os07g34610
Os.10487.1.S1_at--1082--691Chr07:20750074..20750098 (25 bp)
ATGAGTACCTCCGTGACATTTATCA
LOC_Os07g34610
Target Sequence 
GGACGTCGTTGGTTTCAATTGATCAAGATGCATTCTCAGCTCGGGTCAGGAAAAACATTGAGCAACTAGCTGCACTGTTG
AGAAGCTATCCGTTGTCGAACCCAGAAGACGAGCAAGTTCAAGATATAATGGAGAAGATAAGACTGAAATTCAGGGTTAT
CACAGCAAGTTTAGGTACAAAACTGGAGTATCAAGGTCGCCCTACATCATCCAAGCAGGATGTTGAGGATCTGTAACTAG
TTTAGCTTTCATTGTCAAATTACCATGTTGAAATGATATATGAGACCCAAACATGTTTATGTAGGTTTCGGTTAACGAAT
ACTTGTTCGAGTGAATGCTGCTATATTACTGTGTTTCTAAACATCTTATGAAGGCCACCGGGATCACAGTGGAGACCTGA
AAGCCTGTATCTGAGTATCTATGTACACTCAAGTTAATTTGAGGCAGTTCTGGACTCATCTTGTTTTTGATCCTTAGTCC
TGCTTTACTTACCACATATGAGTACCTCCGTGACATTTATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10487.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis