Browse Element(s) Details


OsAffx.16556.1.S1_at

Description tigr:9635.m03421
TID=OsAffx.16556.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3463011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34598Os.9987.1.S1_at11/117+20737812..20747764Tyrosyl-DNA phosphodiesterase family protein, expressed
LOC_Os07g34610Os.10487.1.S1_at10/117+20747982..20750138Oral cancer overexpressed protein 1 homolog, putative, expressed
LOC_Os07g34620Os.7660.1.S1_at11/117+20750572..20752817expressed protein
LOC_Os07g34630OsAffx.16556.1.S1_at11/117+20760328..20761107hypothetical protein
LOC_Os07g34640Os.27195.1.S1_at10/117+20763084..20767891expressed protein
LOC_Os07g34650Os.27798.1.S1_a_at11/117+20767406..20770653expressed protein
LOC_Os07g34660OsAffx.28751.1.S1_x_at11/117+20779138..20779443hypothetical protein
LOC_Os07g34670OsAffx.16557.1.S1_at11/117+20781337..20783022Peroxidase 1 precursor, putative, expressed
LOC_Os07g34680OsAffx.28752.1.S1_at11/117+20783811..20784690hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16556.1.S1_at--478--1251Chr07:20760511..20760535 (25 bp)
AGATTGGCGGTTTTCAGACGCGCGT
LOC_Os07g34630
OsAffx.16556.1.S1_at--1088--7151Chr07:20760551..20760575 (25 bp)
GTCTCGGCGCTGACTGCCGCAGAAA
LOC_Os07g34630
OsAffx.16556.1.S1_at--379--2391Chr07:20760737..20760757 (21 bp)
AAACGGCTACCGATGATATCCTCGT
LOC_Os07g34630
OsAffx.16556.1.S1_at--1028--711Chr07:20760745..20760769 (25 bp)
ATGATATCCTCGTGGCTTCACCTGA
LOC_Os07g34630
OsAffx.16556.1.S1_at--492--8491Chr07:20760757..20760781 (25 bp)
TGGCTTCACCTGATGTTGTCATGAC
LOC_Os07g34630
OsAffx.16556.1.S1_at--1044--10771Chr07:20760772..20760796 (25 bp)
TTGTCATGACATCAGTTGCTGGAAA
LOC_Os07g34630
OsAffx.16556.1.S1_at--351--3431Chr07:20760784..20760808 (25 bp)
CAGTTGCTGGAAAAATGTCTTGGTC
LOC_Os07g34630
OsAffx.16556.1.S1_at--679--2291Chr07:20760796..20760820 (25 bp)
AAATGTCTTGGTCAACTGGCGAGAG
LOC_Os07g34630
OsAffx.16556.1.S1_at--679--8011Chr07:20760983..20761007 (25 bp)
GGAGGATACTGATTATGCAATTGCA
LOC_Os07g34630
OsAffx.16556.1.S1_at--734--6552Chr10:10841363..10841416 (25 bp)
GATTATGCAATTGCAACCGGCAAAG
NONE
OsAffx.16556.1.S1_at--725--4211Chr07:20761009..20761076 (25 bp)
CCGGCAAAGCTCATTACGTAGTCAT
LOC_Os07g34630
Target Sequence 
AGATTGGCGGTTTTCAGACGCGCGTCCGCGTCTCCGCGAGGTCTCGGCGCTGACTGCCGCAGAAACGGCTACCGATGATA
TCCTCGTGGCTTCACCTGATGTTGTCATGACATCAGTTGCTGGAAAAATGTCTTGGTCAACTGGCGAGAGGGATGTTGAG
GGCGGGCGCAATCGAGAAAAGAGAAAAAAGGAGGATACTGATTATGCAATTGCAACCGGCAAAGCTCATTACGTAGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16556.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis