Browse Element(s) Details


OsAffx.28753.1.S1_at

Description tigr:9635.m03434
TID=OsAffx.28753.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3475011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34700NANA7+20794387..20796028retrotransposon protein, putative, unclassified
LOC_Os07g34710Os.53161.1.S1_x_at11/117+20801612..20803666Peroxidase 27 precursor, putative, expressed
LOC_Os07g34720OsAffx.16558.1.S1_at11/117+20805166..20805687Harpin-induced protein 1 containing protein
LOC_Os07g34730Os.14207.1.S1_at11/117+20806339..20810838Acyltransferase family protein, expressed
LOC_Os07g34740Os.27614.1.S1_at11/117+20811188..20816227expressed protein
LOC_Os07g34750OsAffx.28753.1.S1_at11/117+20817190..20820411hypothetical protein
LOC_Os07g34760OsAffx.16559.1.S1_at11/117+20824300..20825519expressed protein
LOC_Os07g34770NANA7+20826052..20832760transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g34780OsAffx.5527.1.S1_at11/117+20840925..20844298Ankyrin repeat domain protein 28, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28753.1.S1_at--616--291Chr07:20817725..20817749 (25 bp)
ATAGAGGTCTTCTGTCCTTGTCAAT
LOC_Os07g34750
OsAffx.28753.1.S1_at--952--7651Chr07:20817677..20817701 (25 bp)
GGGATGCTATTGATGCTATTTTACT
LOC_Os07g34750
OsAffx.28753.1.S1_at--351--1091Chr07:20817533..20817557 (25 bp)
AGGGCGCCCTCGATGTACTTAGCAG
LOC_Os07g34750
OsAffx.28753.1.S1_at--284--911Chr07:20817510..20817534 (25 bp)
AGGCTCGATGGCATACGCTATCTCA
LOC_Os07g34750
OsAffx.28753.1.S1_at--145--9291Chr07:20817452..20817476 (25 bp)
TCCGGTTCTGGAGTTTTGGGAATCT
LOC_Os07g34750
OsAffx.28753.1.S1_at--611--7611Chr07:20817435..20817459 (25 bp)
GGGAATCTCATGGACCTTATCATTG
LOC_Os07g34750
OsAffx.28753.1.S1_at--924--6511Chr07:20817405..20817429 (25 bp)
GATATTATTATCAGCGTCACCTTTG
LOC_Os07g34750
OsAffx.28753.1.S1_at--442--9651Chr07:20817395..20817419 (25 bp)
TCAGCGTCACCTTTGGTTACCGAAA
LOC_Os07g34750
OsAffx.28753.1.S1_at--23--7711Chr07:20817314..20817338 (25 bp)
GGGTCCGTAAGCTGCAGAGTCTCAC
LOC_Os07g34750
OsAffx.28753.1.S1_at--538--7151Chr07:20817296..20817320 (25 bp)
GTCTCACACACCTCGAACTCAAGGG
LOC_Os07g34750
OsAffx.28753.1.S1_at--1095--1891Chr07:20817267..20817291 (25 bp)
ACGTGCAACCCGCAGAATCTGGAAA
LOC_Os07g34750
Target Sequence 
ATAGAGGTCTTCTGTCCTTGTCAATCCGAATGGATCCACCGGGTAACTGGGATGCTATTGATGCTATTTTACTGAGACCT
CCAAAGCTTCTGGAGAGCCTACACATCTGTAGCATCAGAAGCAGGTTGCCTCCCAGGATCAAGGAGCTCCATCACCTTGC
CAAGATAACTCTACGTGACACCTTTTTGAATCAGGGCGCCCTCGATGTACTTAGCAGGCTCGATGGCATACGCTATCTCA
GGCTTTGCTACCATTCATTTGCAGAAGGCGCTCTCCGGTTCTGGAGTTTTGGGAATCTCATGGACCTTATCATTGAAGAT
GATATTATTATCAGCGTCACCTTTGGTTACCGAAACCCTGATAAGCTTGAAAAGATAGTTTGGTCCTTCACTCACATGGA
GAAGCTTTCAGGGGTCCGTAAGCTGCAGAGTCTCACACACCTCGAACTCAAGGGGGGAACGTGCAACCCGCAGAATCTGG
AAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28753.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis