Browse Element(s) Details


OsAffx.5529.1.S1_at

Description tigr:9635.m03441
TID=OsAffx.5529.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3482011/11transient receptor potential cation channel, subfamily N, member 1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34780OsAffx.5527.1.S1_at11/117+20840925..20844298Ankyrin repeat domain protein 28, putative
LOC_Os07g34790OsAffx.5528.1.S1_at11/117+20848144..20849949hypothetical protein
LOC_Os07g34800Os.28943.1.S1_x_at1/117+20853335..20856642retrotransposon protein, putative, unclassified
LOC_Os07g34810NANA7+20857259..20863414transposon protein, putative, unclassified
LOC_Os07g34820OsAffx.5529.1.S1_at11/117+20865385..20866152transient receptor potential cation channel, subfamily N, member 1, putative
LOC_Os07g34830Os.51015.1.S1_at11/117+20872577..20875029ankyrin repeat family protein, putative, expressed
LOC_Os07g34840OsAffx.16560.1.S1_at11/117+20879505..20880374hypothetical protein
LOC_Os07g34840OsAffx.9743.2.S1_x_at1/117+20879505..20880374hypothetical protein
LOC_Os07g34850OsAffx.16561.1.S1_at11/117+20882956..20884266Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g34860OsAffx.19542.3.S1_x_at7/117+20889387..20893609retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5529.1.S1_at--753--9031Chr07:20865557..20865581 (25 bp)
TGCAGGTCTCAATCAACGTCGGCGC
LOC_Os07g34820
OsAffx.5529.1.S1_at--950--5611Chr07:20865609..20865633 (25 bp)
GACAGGTACGAGCTCCCTCCTTGGG
LOC_Os07g34820
OsAffx.5529.1.S1_at--640--1911Chr07:20865644..20865668 (25 bp)
ACGGGAACACGGCATTGCATCTCGT
LOC_Os07g34820
OsAffx.5529.1.S1_at--1105--8591Chr07:20865725..20865749 (25 bp)
TGGTCGCCACGAGGAACAAGTGCCT
LOC_Os07g34820
OsAffx.5529.1.S1_at--743--8251Chr07:20865782..20865806 (25 bp)
GGCACCGGGATGTAGCAGACTGTCT
LOC_Os07g34820
OsAffx.5529.1.S1_at--964--1391Chr07:20865798..20865822 (25 bp)
AGACTGTCTCTTGCCGATGATGCGC
LOC_Os07g34820
OsAffx.5529.1.S1_at--394--4451Chr07:20865840..20865864 (25 bp)
GCCTCTGCGGGCGATGAACCAGCTG
LOC_Os07g34820
OsAffx.5529.1.S1_at--486--4251Chr07:20865900..20865924 (25 bp)
CCGTGCTGAGGTGGTGGATCTATTC
LOC_Os07g34820
OsAffx.5529.1.S1_at--912--7951Chr07:20865915..20865939 (25 bp)
GGATCTATTCATGGCGGAAGCTCCC
LOC_Os07g34820
OsAffx.5529.1.S1_at--287--8191Chr07:20865930..20865954 (25 bp)
GGAAGCTCCCGAGCTGGCCGCAGTA
LOC_Os07g34820
OsAffx.5529.1.S1_at--924--4831Chr07:20866032..20866056 (25 bp)
GCTACGTCCGTCACGTGACGGGATG
LOC_Os07g34820
Target Sequence 
TGCAGGTCTCAATCAACGTCGGCGCCGCGGCCCTGCGTGCAGCGGCGCCGCGGACAGGTACGAGCTCCCTCCTTGGGGTG
ACGAGCAACGGGAACACGGCATTGCATCTCGTCGCCAGCCGCGGCCACGTCGAGCTCGCGAAGCTCATCAGCGAGACGGC
GCCGTCGCTGGTCGCCACGAGGAACAAGTGCCTCGACACGCCGTTGCACTGCGCGGCGAAGGCTGGGCACCGGGATGTAG
CAGACTGTCTCTTGCCGATGATGCGCGCCGCCGAGGGGACGGCGCCTCTGCGGGCGATGAACCAGCTGGGCGCCACCGCG
CTGCACGAAGCCGTCCGGCACGGCCGTGCTGAGGTGGTGGATCTATTCATGGCGGAAGCTCCCGAGCTGGCCGCAGTAGC
ATCCGGCGATGGCGTCTCGCCGTTGTACTTGGCGGCGACGACTGGTAGTGGTTCGGTGTGTTTGGTTGCGGCGCTGCTAC
GTCCGTCACGTGACGGGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5529.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis