Browse Element(s) Details


OsAffx.5536.1.S1_at

Description tigr:9635.m03522
TID=OsAffx.5536.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3564011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35620OsAffx.16572.3.S1_at11/117+21324007..21324669expressed protein
LOC_Os07g35630OsAffx.2182.1.S1_at1/117+21331886..21335913retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g35630OsAffx.828.1.S1_x_at1/117+21331886..21335913retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g35640OsAffx.5536.1.S1_at11/117+21344090..21345214hypothetical protein
LOC_Os07g35650Os.49803.1.S1_at2/117+21351387..21354958Protein kinase domain containing protein
LOC_Os07g35660Os.49408.1.S1_at9/117+21357959..21364861Protein kinase domain containing protein, expressed
LOC_Os07g35660Os.10719.1.S1_at1/117+21357959..21364861Protein kinase domain containing protein, expressed
LOC_Os07g35670OsAffx.5537.1.S1_at11/117+21365818..21366225hypothetical protein
LOC_Os07g35680Os.22699.1.S1_at2/117+21366421..21372956Protein kinase domain containing protein, expressed
LOC_Os07g35680Os.49408.1.S1_at2/117+21366421..21372956Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5536.1.S1_at--252--2931Chr07:21344590..21344614 (25 bp)
AAGGACTCAGTAAGGCGGTTCGGCA
LOC_Os07g35640
OsAffx.5536.1.S1_at--637--5711Chr07:21344539..21344563 (25 bp)
GACTCGCCTTACCACAATATTTTCT
LOC_Os07g35640
OsAffx.5536.1.S1_at--904--3111Chr07:21344524..21344548 (25 bp)
AATATTTTCTCGCTGGCTCAGTGCA
LOC_Os07g35640
OsAffx.5536.1.S1_at--877--6291Chr07:21344444..21344468 (25 bp)
GATGATGCCCAAGTACTTCGTCGGG
LOC_Os07g35640
OsAffx.5536.1.S1_at--786--5031Chr07:21344388..21344412 (25 bp)
GCAACTTCCGGTTTGAGGCGTACGA
LOC_Os07g35640
OsAffx.5536.1.S1_at--388--4491Chr07:21344255..21344279 (25 bp)
GCCGGCAGCATCAGGTAATATTAAT
LOC_Os07g35640
OsAffx.5536.1.S1_at--1148--6051Chr07:21344218..21344242 (25 bp)
GAGTTGCTGCTCGATCGCTGTGTCT
LOC_Os07g35640
OsAffx.5536.1.S1_at--346--9351Chr07:21344204..21344228 (25 bp)
TCGCTGTGTCTTACTGTGGCTTGCA
LOC_Os07g35640
OsAffx.5536.1.S1_at--1006--8491Chr07:21344188..21344212 (25 bp)
TGGCTTGCACTCACCATCAAACGAA
LOC_Os07g35640
OsAffx.5536.1.S1_at--201--5451Chr07:21344166..21344190 (25 bp)
GAACGTCAAAAATCGCACCTCCACT
LOC_Os07g35640
OsAffx.5536.1.S1_at--462--5851Chr07:21344123..21344147 (25 bp)
GAGCCCCGGAAACTACAGGGACGCT
LOC_Os07g35640
Target Sequence 
AAGGACTCAGTAAGGCGGTTCGGCACGGGGGAGATGGGGTTCAACGTCTTCGACTCGCCTTACCACAATATTTTCTCGCT
GGCTCAGTGCACGCCGGACATGTCGGAGGCCGACTGCCGGAGCTGCCTCGGGGACATAATCAGGAGGATGATGCCCAAGT
ACTTCGTCGGGAAGCCCGGCGGCAGGGTCTTCGGCGTTCGGTGCAACTTCCGGTTTGAGGCGTACGAGTTCTTCTCCGGC
CGGCCGCTGTTGCAGTTGTCGGGGCTGCCGCCCTCACCACCACCACCAGGGCTGTCCGCACCATCGGGGCTGCCGCCCTC
ACCGCCGGGGCTGCGGCCGGCAGCATCAGGTAATATTAATAATAGAGAAGGTGAGTTGCTGCTCGATCGCTGTGTCTTAC
TGTGGCTTGCACTCACCATCAAACGAACGTCAAAAATCGCACCTCCACTCCTTGTTCTTCGCCCGGCGAGCCCCGGAAAC
TACAGGGACGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5536.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis