Browse Element(s) Details


OsAffx.5557.1.S1_at

Description tigr:9635.m03670
TID=OsAffx.5557.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3706011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37020OsAffx.5556.1.S1_at11/117+22181189..22182168hypothetical protein
LOC_Os07g37030Os.2248.1.S1_at11/117+22182713..22185239Cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed
LOC_Os07g37040Os.13496.1.S1_at11/117+22185662..22187362PB1 domain containing protein, expressed
LOC_Os07g37050NANA7+22198721..22200436hypothetical protein
LOC_Os07g37060OsAffx.5557.1.S1_at11/117+22201299..22201943expressed protein
LOC_Os07g37070NANA7+22203895..22204634hypothetical protein
LOC_Os07g37080OsAffx.16592.1.S1_at11/117+22209596..22211455F-box domain containing protein
LOC_Os07g37090Os.22408.1.S1_at11/117+22220606..22221642Ribosome inactivating protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5557.1.S1_at--1078--7771Chr07:22201809..22201833 (25 bp)
GGTCGGGACCCAGCCGGGAGCCATG
LOC_Os07g37060
OsAffx.5557.1.S1_at--653--871Chr07:22201787..22201811 (25 bp)
ATGGCGAAGGCGTCCCGCGAGCCCT
LOC_Os07g37060
OsAffx.5557.1.S1_at--876--4551Chr07:22201743..22201763 (21 bp)
GCGCCCCTCTTCCTTTGCAGGAGAG
LOC_Os07g37060
OsAffx.5557.1.S1_at--826--4531Chr07:22201386..22201761 (25 bp)
GCCCCTCTTCCTTTGCAGGAGAGGC
LOC_Os07g37060
OsAffx.5557.1.S1_at--12--9571Chr07:22201381..22201756 (25 bp)
TCTTCCTTTGCAGGAGAGGCGCCGT
LOC_Os07g37060
OsAffx.5557.1.S1_at--38--10671Chr07:22201379..22201399 (21 bp)
TTCCTTTGCAGGAGAGGCGCCGTCC
LOC_Os07g37060
OsAffx.5557.1.S1_at--447--5411Chr07:22201349..22201373 (25 bp)
GAAGCCGCCTCCACAGCTCAGCGGT
LOC_Os07g37060
OsAffx.5557.1.S1_at--417--3311Chr07:22201338..22201362 (25 bp)
CACAGCTCAGCGGTGCGGACGGTAT
LOC_Os07g37060
OsAffx.5557.1.S1_at--251--2151Chr07:22201337..22201361 (25 bp)
ACAGCTCAGCGGTGCGGACGGTATC
LOC_Os07g37060
OsAffx.5557.1.S1_at--616--3751Chr07:22201333..22201357 (25 bp)
CTCAGCGGTGCGGACGGTATCGCCA
LOC_Os07g37060
OsAffx.5557.1.S1_at--446--4671Chr07:22201329..22201353 (25 bp)
GCGGTGCGGACGGTATCGCCAGGGA
LOC_Os07g37060
Target Sequence 
GGTCGGGACCCAGCCGGGAGCCATGGCGAAGGCGTCCCGCGAGCCCTCCCCCCACGTCTCCCTATCCTGCGCGCCCCTCT
TCCTTTGCAGGAGAGGCGCCGTCCACCGGGAAGCCGCCTCCACAGCTCAGCGGTGCGGACGGTATCGCCAGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5557.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis