Browse Element(s) Details


OsAffx.5562.1.S1_at

Description tigr:9635.m03723
TID=OsAffx.5562.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3754011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37520Os.40360.1.S1_x_at1/117+22463955..22465440hypothetical protein
LOC_Os07g37530Os.46485.1.S1_at9/117+22472867..22475482Major Facilitator Superfamily protein, expressed
LOC_Os07g37530OsAffx.10993.2.S1_x_at1/117+22472867..22475482Major Facilitator Superfamily protein, expressed
LOC_Os07g37530OsAffx.10993.1.S1_x_at1/117+22472867..22475482Major Facilitator Superfamily protein, expressed
LOC_Os07g37540OsAffx.5562.1.S1_at11/117+22484437..22484763hypothetical protein
LOC_Os07g37550Os.28216.2.S1_s_at11/117+22485740..22487030Chlorophyll a-b binding protein of LHCII type III, chloroplast precursor, putative, expressed
LOC_Os07g37550Os.28216.2.S1_a_at8/117+22485740..22487030Chlorophyll a-b binding protein of LHCII type III, chloroplast precursor, putative, expressed
LOC_Os07g37550Os.28216.3.S1_x_at3/117+22485740..22487030Chlorophyll a-b binding protein of LHCII type III, chloroplast precursor, putative, expressed
LOC_Os07g37560Os.10019.1.S1_a_at11/117+22487133..22496733Myosin head family protein, expressed
LOC_Os07g37570Os.5422.1.S1_s_at11/117+22504860..22507507expressed protein
LOC_Os07g37570OsAffx.16599.1.S1_at11/117+22504860..22507507expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5562.1.S1_at--778--3931Chr07:22484481..22484505 (25 bp)
CGGCGAGACCGAGGCTCAGATGATG
LOC_Os07g37540
OsAffx.5562.1.S1_at--706--1611Chr07:22484534..22484558 (25 bp)
AGCTGTTCCGGGACGTGCTGCCGCC
LOC_Os07g37540
OsAffx.5562.1.S1_at--982--4211Chr07:22484645..22484669 (25 bp)
CCGTGATCGTGCTTGGCCCGGCCGT
LOC_Os07g37540
OsAffx.5562.1.S1_at--634--10851Chr07:22484657..22484681 (25 bp)
TTGGCCCGGCCGTGACGAGGATGCT
LOC_Os07g37540
OsAffx.5562.1.S1_at--578--3991Chr07:22484667..22484691 (25 bp)
CGTGACGAGGATGCTCGTCGACCAA
LOC_Os07g37540
OsAffx.5562.1.S1_at--214--2951Chr07:22484690..22484714 (25 bp)
AAGGCGCGACCCATCTTCTGGACGA
LOC_Os07g37540
OsAffx.5562.1.S1_at--641--5811Chr07:22484697..22484721 (25 bp)
GACCCATCTTCTGGACGAGCTCGAA
LOC_Os07g37540
OsAffx.5562.1.S1_at--115--4311Chr07:22484700..22484724 (25 bp)
CCATCTTCTGGACGAGCTCGAATTG
LOC_Os07g37540
OsAffx.5562.1.S1_at--284--9571Chr07:22484703..22484727 (25 bp)
TCTTCTGGACGAGCTCGAATTGCTT
LOC_Os07g37540
OsAffx.5562.1.S1_at--523--10531Chr07:22484705..22484729 (25 bp)
TTCTGGACGAGCTCGAATTGCTTAA
LOC_Os07g37540
OsAffx.5562.1.S1_at--192--8111Chr07:22484709..22484733 (25 bp)
GGACGAGCTCGAATTGCTTAATCAG
LOC_Os07g37540
Target Sequence 
CGGCGAGACCGAGGCTCAGATGATGATGAGGGAGCTGGATGAAGAGCTCAACGAGCTGTTCCGGGACGTGCTGCCGCCAC
CACGGTCGCCGTGGAAGAGGGCGAAGGAGGCCATCCGCCGCCGCAGGAACGGCGCCAAGGTCGCGCCGGCGACGGTGGAC
GCCGCCGTGATCGTGCTTGGCCCGGCCGTGACGAGGATGCTCGTCGACCAAGGCGCGACCCATCTTCTGGACGAGCTCGA
ATTGCTTAATCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5562.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis