Browse Element(s) Details


OsAffx.5597.1.S1_at

Description tigr:9635.m04191
TID=OsAffx.5597.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4186011/11C1-like domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41830OsAffx.16679.1.S1_at11/117+25050161..25052503expressed protein
LOC_Os07g41840OsAffx.28864.1.S1_at11/117+25059228..25059732hypothetical protein
LOC_Os07g41850OsAffx.5596.1.S1_at11/117+25061621..25062850C1-like domain containing protein, expressed
LOC_Os07g41860OsAffx.5597.1.S1_at11/117+25075422..25075979C1-like domain containing protein
LOC_Os07g41870NANA7+25083044..25086349retrotransposon protein, putative, unclassified
LOC_Os07g41880NANA7+25086965..25093120retrotransposon protein, putative, unclassified
LOC_Os07g41890OsAffx.16680.1.S1_at11/117+25096011..25096568C1-like domain containing protein
LOC_Os07g41900Os.4114.1.S2_at11/117+25098705..25102889expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5597.1.S1_at--41--1351Chr07:25075467..25075491 (25 bp)
AGAGAACACCGTTACGGCGCCAAGT
LOC_Os07g41860
OsAffx.5597.1.S1_at--27--7311Chr07:25075514..25075538 (25 bp)
GTGCGAACGCAGAATCACCGGCGAC
LOC_Os07g41860
OsAffx.5597.1.S1_at--1132--5171Chr07:25075552..25075576 (25 bp)
GCAAGTGCGACTTCAACATCCACCA
LOC_Os07g41860
OsAffx.5597.1.S1_at--201--1631Chr07:25075656..25075680 (25 bp)
AGCGGGACGTGCAACACCTGCAAGG
LOC_Os07g41860
OsAffx.5597.1.S1_at--722--8411Chr07:25075793..25075817 (25 bp)
GGCCTGGGAACAGACCGTGCAAGTC
LOC_Os07g41860
OsAffx.5597.1.S1_at--215--7351Chr07:25075809..25075833 (25 bp)
GTGCAAGTCGGCAAGGGTATTCTCC
LOC_Os07g41860
OsAffx.5597.1.S1_at--508--6871Chr07:25075825..25075849 (25 bp)
GTATTCTCCAGTTCGGATTCTTTGT
LOC_Os07g41860
OsAffx.5597.1.S1_at--799--6531Chr07:25075840..25075864 (25 bp)
GATTCTTTGTCCTGCGGGCGACGGA
LOC_Os07g41860
OsAffx.5597.1.S1_at--813--6251Chr07:25075863..25075887 (25 bp)
GATGATATGACCACCGGCGGGCTCG
LOC_Os07g41860
OsAffx.5597.1.S1_at--11--8211Chr07:25075910..25075934 (25 bp)
GGAAGGCTTGTTTGGTCTTTATGAT
LOC_Os07g41860
OsAffx.5597.1.S1_at--156--7151Chr07:25075924..25075948 (25 bp)
GTCTTTATGATAGCACACGCACCGT
LOC_Os07g41860
Target Sequence 
AGAGAACACCGTTACGGCGCCAAGTCGGCCGGCGTCGCCTGCACCGCGTGCGAACGCAGAATCACCGGCGACGGCTACCG
CTGCCGCAAGTGCGACTTCAACATCCACCACGCCTGCCTCGCCCTCCCGGTGTCCGCCTCCGTCGACGAGCACCGCGAGC
ACGCGCTCACGCTCTCCAGCCTTGCGGCCAGCGGGACGTGCAACACCTGCAAGGTGACCTCCCAGGCCGGGTGCTACCTG
TACCGCTGCGCGCCGTGCGGCTTCAACGTGCACCCGCGGTGCATGCCGCCGCCGTCGCAGCAGCAGCAGCAGGAGGAGGC
TGGCACGGCCTGGGAACAGACCGTGCAAGTCGGCAAGGGTATTCTCCAGTTCGGATTCTTTGTCCTGCGGGCGACGGATG
ATATGACCACCGGCGGGCTCGCGTCGCCGGTGATAGACGTAATGGAAGGCTTGTTTGGTCTTTATGATAGCACACGCACC
GT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5597.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis