Browse Element(s) Details


OsAffx.5748.1.S1_at

Description tigr:9636.m00780
TID=OsAffx.5748.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0829010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08260OsAffx.5747.1.S1_at11/118+4721424..4722716hypothetical protein
LOC_Os08g08270OsAffx.16894.1.S1_at11/118+4738062..4738325hypothetical protein
LOC_Os08g08279NANA8+4740883..4741286NA
LOC_Os08g08290OsAffx.5748.1.S1_at10/118+4744681..4747342hypothetical protein
LOC_Os08g08290OsAffx.12155.2.A1_at2/118+4744681..4747342hypothetical protein
LOC_Os08g08300NANA8+4751029..4754123transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08310Os.47463.1.S1_x_at6/118+4755641..4761656transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08310Os.14491.2.S1_x_at4/118+4755641..4761656transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5748.1.S1_at--949--3031Chr08:4746481..4746505 (25 bp)
AATTGACAGAACAGGTGGAGTTGGT
LOC_Os08g08290
OsAffx.5748.1.S1_at--958--1871Chr08:4746446..4746470 (25 bp)
ACGATGAGTGCGCTGCTATGACCGA
LOC_Os08g08290
OsAffx.5748.1.S1_at--445--1131Chr08:4746440..4746464 (25 bp)
AGTGCGCTGCTATGACCGACGATGA
LOC_Os08g08290
OsAffx.5748.1.S1_at--640--9072Chr08:21668016..21668036 (21 bp)
TGCTATGACCGACGATGACCACGAA
NONE
OsAffx.5748.1.S1_at--955--3674Chr08:21668251..21668278 (25 bp)
CTTTCTGATGCTCGATGTGGGCTGT
NONE
OsAffx.5748.1.S1_at--459--7551NONE
GTGGCGCCGCCATTGAAAAACGTGC
NONE
OsAffx.5748.1.S1_at--1060--2391Chr08:4744785..4745080 (25 bp)
AAAAAACGAGAGAGCGTCGACGCGG
LOC_Os08g08290
OsAffx.5748.1.S1_at--428--8011Chr08:4744745..4744769 (25 bp)
GGAGGGCCGTGCGAATGCCAAACCA
LOC_Os08g08290
OsAffx.5748.1.S1_at--198--7291Chr08:4744737..4744761 (25 bp)
GTGCGAATGCCAAACCAAGTTGCGG
LOC_Os08g08290
OsAffx.5748.1.S1_at--630--4371Chr08:4744729..4744753 (25 bp)
GCCAAACCAAGTTGCGGTTGATCTG
LOC_Os08g08290
OsAffx.5748.1.S1_at--634--8851Chr08:4744711..4744735 (25 bp)
TGATCTGGGAGTACCACACACGAAC
LOC_Os08g08290
Target Sequence 
AATTGACAGAACAGGTGGAGTTGGTGCGACGAGCAACGATGAGTGCGCTGCTATGACCGACGATGACCACGAAGATCCCT
TGGAGGGCGCATTGGAAGCGGCAGTGATGGCGGAGGTCTGCGAGATCACTAGGAACGGCGGCGGAGGCGGAGGCGGCGGT
GAAGGCGGCGGCGGAGGCGGCGGAGGAGGAGGCGGTGGAGGAGGCGGCATCGAATCCATGGCGGCAGCGGCTAGGGTTCA
AGCCGCAACAGCGACGAACTTCTTCGTTCCCCTCCTCTTTGACTCCTCGTTCCTCCTCTTTCTGATGCTCGATGTGGGCT
GTGGTGGCGCCGCCATTGAAAAACGTGCGCGTAAAAAACGAGAGAGCGTCGACGCGGGCGGTGGCGTGCGCGGGAGGGCC
GTGCGAATGCCAAACCAAGTTGCGGTTGATCTGGGAGTACCACACACGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5748.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis