Browse Element(s) Details


OsAffx.5870.1.S1_at

Description tigr:9636.m01866
TID=OsAffx.5870.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1902011/11hypothetical protein
LOC_Os08g189701/11Pectate lyase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g18990Os.46314.2.S1_x_at3/118+11325783..11330011retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19000OsAffx.5869.1.S1_at11/118+11333557..11336250hypothetical protein
LOC_Os08g19010Os.54523.1.S1_at1/118+11343073..11344136hypothetical protein
LOC_Os08g19010OsAffx.13987.1.S1_at1/118+11343073..11344136hypothetical protein
LOC_Os08g19020OsAffx.5870.1.S1_at11/118+11350287..11350880hypothetical protein
LOC_Os08g19030OsAffx.29269.1.S1_at11/118+11355391..11356794hypothetical protein
LOC_Os08g19040OsAffx.17067.1.S1_at11/118+11357517..11358381hypothetical protein
LOC_Os08g19050NANA8+11362595..11364229hypothetical protein
LOC_Os08g19060OsAffx.5871.1.S1_at11/118+11372447..11375356retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0016829molecular_functionlyase activity
GO:0030570molecular_functionpectate lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5870.1.S1_at--341--9951Chr08:11350319..11350343 (25 bp)
TACCCCGGCTGGTGGTCTCCTCTAT
LOC_Os08g19020
OsAffx.5870.1.S1_at--91--8632Chr08:11350328..11350352 (25 bp)
TGGTGGTCTCCTCTATTTCCCTAAC
LOC_Os08g19020
OsAffx.5870.1.S1_at--1132--9531Chr08:11350339..11350363 (25 bp)
TCTATTTCCCTAACGCTGTCTTATA
LOC_Os08g19020
OsAffx.5870.1.S1_at--783--10271Chr08:11350343..11350367 (25 bp)
TTTCCCTAACGCTGTCTTATACCTT
LOC_Os08g19020
OsAffx.5870.1.S1_at--221--9811Chr08:11350349..11350373 (25 bp)
TAACGCTGTCTTATACCTTCCCATG
LOC_Os08g19020
OsAffx.5870.1.S1_at--384--7131Chr08:11350356..11350794 (25 bp)
GTCTTATACCTTCCCATGCATGGAG
LOC_Os08g19020
OsAffx.5870.1.S1_at--339--10171Chr08:11350360..11350798 (25 bp)
TATACCTTCCCATGCATGGAGGAAT
LOC_Os08g19020
OsAffx.5870.1.S1_at--581--3511Chr08:11350787..11350808 (22 bp)
CATGCATGGAGGAATGGACTACCAA
LOC_Os08g19020
OsAffx.5870.1.S1_at--207--851Chr08:11350797..11350821 (25 bp)
ATGGACTACCAAACGATGCTCCTGT
LOC_Os08g19020
OsAffx.5870.1.S1_at--874--9971Chr08:11350803..11350827 (25 bp)
TACCAAACGATGCTCCTGTGCGAAG
LOC_Os08g19020
OsAffx.5870.1.S1_at--848--3271Chr08:11350806..11350830 (25 bp)
CAAACGATGCTCCTGTGCGAAGGAG
LOC_Os08g19020
Target Sequence 
TACCCCGGCTGGTGGTCTCCTCTATTTCCCTAACGCTGTCTTATACCTTCCCATGCATGGAGGAATGGACTACCAAACGA
TGCTCCTGTGCGAAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5870.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis