Browse Element(s) Details


OsAffx.5871.1.S1_at

Description tigr:9636.m01870
TID=OsAffx.5871.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1906011/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19020OsAffx.5870.1.S1_at11/118+11350287..11350880hypothetical protein
LOC_Os08g19030OsAffx.29269.1.S1_at11/118+11355391..11356794hypothetical protein
LOC_Os08g19040OsAffx.17067.1.S1_at11/118+11357517..11358381hypothetical protein
LOC_Os08g19050NANA8+11362595..11364229hypothetical protein
LOC_Os08g19060OsAffx.5871.1.S1_at11/118+11372447..11375356retrotransposon, putative, centromere-specific
LOC_Os08g19070OsAffx.22908.1.S1_at1/118+11377703..11377975hypothetical protein
LOC_Os08g19080NANA8+11381049..11383349Transposable element protein, putative, Retrotrans_gag
LOC_Os08g19089NANA8+11385089..11385390NA
LOC_Os08g19100OsAffx.5872.1.S1_at11/118+11388992..11390465hypothetical protein
LOC_Os08g19110NANA8+11397296..11398623hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5871.1.S1_at--981--5271Chr08:11375152..11375176 (25 bp)
GAATGGCCACAATCATGGTTTTACT
LOC_Os08g19060
OsAffx.5871.1.S1_at--169--8632Chr08:11374441..11374465 (25 bp)
TGGGTCCCTTCACGTTCGGGTACAT
LOC_Os08g19060
OsAffx.5871.1.S1_at--1065--2331Chr08:11374406..11374430 (25 bp)
AAAGACGGACTTAGCCTGGCAGACC
LOC_Os08g19060
OsAffx.5871.1.S1_at--431--5151Chr08:11373661..11373685 (25 bp)
GCAACGTCGGCTTAAGCCTGAGCAG
LOC_Os08g19060
OsAffx.5871.1.S1_at--1025--9851Chr08:11373390..11373414 (25 bp)
TACAGCAAGTCACGTGGGCGGCACA
LOC_Os08g19060
OsAffx.5871.1.S1_at--1139--7551Chr08:11373375..11373399 (25 bp)
GGGCGGCACATTGACGTTGGTATCC
LOC_Os08g19060
OsAffx.5871.1.S1_at--840--6871Chr08:11373356..11373380 (25 bp)
GTATCCCGGTCCAGAAGGTGTCAGT
LOC_Os08g19060
OsAffx.5871.1.S1_at--1069--2971Chr08:11373309..11373333 (25 bp)
AATGGGCGCAGCTGGCTACCGAGCC
LOC_Os08g19060
OsAffx.5871.1.S1_at--996--6611Chr08:11373254..11373278 (25 bp)
GTTGGTCTCCAAATAGCCGGCTTTT
LOC_Os08g19060
OsAffx.5871.1.S1_at--204--3951Chr08:11373237..11373261 (25 bp)
CGGCTTTTCAGACCCACAGAAGAGA
LOC_Os08g19060
OsAffx.5871.1.S1_at--718--2611Chr08:11372528..11372552 (25 bp)
AACCCGCTGCAGTTTGGAGACCGAG
LOC_Os08g19060
Target Sequence 
GAATGGCCACAATCATGGTTTTACTACCAAAAAGTGAGGTTGGAGACCGGTGGTGACAACCCTGTCCATCCTTTGGGTCC
CTTCACGTTCGGGTACATCATAGAGCTCAAAGACGGACTTAGCCTGGCAGACCAAGGAAGGCAGCGCCGGATCCACCCGC
AGCGATGCCCGCAACGTCGGCTTAAGCCTGAGCAGCCGTTCCCATCGCTGCCCCTCTGTGCGTACAGCAAGTCACGTGGG
CGGCACATTGACGTTGGTATCCCGGTCCAGAAGGTGTCAGTGACTGGAGAAGCGGTCGGGCCCAATGGGCGCAGCTGGCT
ACCGAGCCCACCACGCATCTCTATCTCATCTTCTTTTTGTTGGTCTCCAAATAGCCGGCTTTTCAGACCCACAGAAGAGA
GGGACAGGAAGATTCCAACCCGCTGCAGTTTGGAGACCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5871.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis