Browse Element(s) Details


OsAffx.5905.1.S1_at

Description tigr:9636.m02300
TID=OsAffx.5905.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=B3 DNA binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2357010/11B3 DNA binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23510NANA8+14100569..14104965retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23520OsAffx.29317.1.S1_at11/118+14105533..14106306hypothetical protein
LOC_Os08g23530NANA8+14113820..14114563retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23540Os.48015.1.A1_x_at1/118+14117945..14120185retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23550OsAffx.29318.1.S1_at11/118+14122871..14123188hypothetical protein
LOC_Os08g23560OsAffx.5904.1.S1_at11/118+14125457..14126229hypothetical protein
LOC_Os08g23570OsAffx.5905.1.S1_at10/118+14127657..14130663B3 DNA binding domain containing protein
LOC_Os08g23580Os.47463.1.S1_x_at3/118+14134806..14143095transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23580Os.14491.2.S1_x_at3/118+14134806..14143095transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23580OsAffx.13304.1.S1_at2/118+14134806..14143095transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23580Os.27037.1.A1_at1/118+14134806..14143095transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23580OsAffx.5804.1.S1_at1/118+14134806..14143095transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23590OsAffx.17115.1.S1_at11/118+14143913..14150421hypothetical protein
LOC_Os08g23590Os.53409.1.A1_at1/118+14143913..14150421hypothetical protein
LOC_Os08g23600OsAffx.29319.1.S1_at10/118+14155196..14156372hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5905.1.S1_at--44--6331Chr08:14128564..14128588 (25 bp)
GATGCAATTGCCTACTGAAACCGTG
LOC_Os08g23570
OsAffx.5905.1.S1_at--235--8991Chr08:14128541..14128565 (25 bp)
TGAACCATTTTCATGCTCCTCATTA
LOC_Os08g23570
OsAffx.5905.1.S1_at--462--3751Chr08:14128523..14128547 (25 bp)
CTCATTATCCCATGCAGATGCCAAT
LOC_Os08g23570
OsAffx.5905.1.S1_at--303--3151Chr08:14128501..14128525 (25 bp)
AATTGAAAACATGGCCCTTTCTCGC
LOC_Os08g23570
OsAffx.5905.1.S1_at--232--9051Chr08:14128454..14128478 (25 bp)
TGCAGTCACCACCAACATATAGATG
LOC_Os08g23570
OsAffx.5905.1.S1_at--702--2811NONE
AAGATATTCTTTGCCCTCTGAAGAT
NONE
OsAffx.5905.1.S1_at--950--6331Chr08:14128203..14128227 (25 bp)
GATCCCATCATTGGGCGTAGGACCA
LOC_Os08g23570
OsAffx.5905.1.S1_at--613--5951Chr08:14128090..14128114 (25 bp)
GAGCAACGTGTCTGGAGTGTTATCC
LOC_Os08g23570
OsAffx.5905.1.S1_at--318--7431Chr08:14127773..14128098 (25 bp)
GTGTTATCCACTCTAAGTGTCGCCA
LOC_Os08g23570
OsAffx.5905.1.S1_at--494--9111Chr08:14127762..14127782 (21 bp)
TCTAAGTGTCGCCAAACGGTACGTG
LOC_Os08g23570
OsAffx.5905.1.S1_at--943--6011Chr08:14127719..14127743 (25 bp)
GAGAGATTCATCAGTCTTTCGCGAC
LOC_Os08g23570
Target Sequence 
GATGCAATTGCCTACTGAAACCGTGAACCATTTTCATGCTCCTCATTATCCCATGCAGATGCCAATTGAAAACATGGCCC
TTTCTCGCACTCAAGCTATGCCCACGCAAATGCAGTCACCACCAACATATAGATGGACACAGGTGCAAAGAGATAACTTA
AGATATTCTTTGCCCTCTGAAGATCAGGGTTGCAGAGTAGGTGTTATACCTGATCCCATCATTGGGCGTAGGACCAAACT
AAATCCAGTTCAGGAGAAGGTGGTGAACTTCAAGATCCAACATATTCATTCTGAAATCCCAATATTTGTAGCTGTCATTA
AAAGGAGCAACGTGTCTGGAGTGTTATCCACTCTAAGTGTCGCCAAACGGTACGTGGATGAATACCTTGGAGGCGAGAGA
TTCATCAGTCTTTCGCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5905.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis