Browse Element(s) Details


OsAffx.5926.1.S1_at

Description tigr:9636.m02536
TID=OsAffx.5926.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=myb-like DNA-binding domain, SHAQKYF class, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2582011/11transfactor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25770OsAffx.17156.1.S1_at10/118+15554569..15555717hypothetical protein
LOC_Os08g25780OsAffx.29351.1.S1_at10/118+15557429..15558641hypothetical protein
LOC_Os08g25780Os.29923.1.S1_at1/118+15557429..15558641hypothetical protein
LOC_Os08g25799Os.15464.1.S1_at11/118+15562691..15571116myb family transcription factor, putative, expressed
LOC_Os08g25799Os.51485.1.S1_at10/118+15562691..15571116myb family transcription factor, putative, expressed
LOC_Os08g25820OsAffx.5926.1.S1_at11/118+15579312..15583536transfactor, putative, expressed
LOC_Os08g25830NANA8+15585233..15586174hypothetical protein
LOC_Os08g25839NANA8+15605622..15605860NA

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5926.1.S1_at--766--1291Chr08:15580925..15580949 (25 bp)
AGATCCAGGGAATCTGCTTTCTGCA
LOC_Os08g25820
OsAffx.5926.1.S1_at--664--4871Chr08:15580940..15580963 (24 bp)
GCTTTCTGCACTTGAAGGTTCATCT
LOC_Os08g25820
OsAffx.5926.1.S1_at--228--3551Chr08:15582864..15582888 (25 bp)
CATCGAAGAGCAGCAGCGTGTCATT
LOC_Os08g25820
OsAffx.5926.1.S1_at--1026--4651Chr08:15582879..15582903 (25 bp)
GCGTGTCATTGGTGCAGGAGCTTCC
LOC_Os08g25820
OsAffx.5926.1.S1_at--516--4351Chr08:15582902..15582926 (25 bp)
CCAGAGCCACGTCAAGCGAACAATT
LOC_Os08g25820
OsAffx.5926.1.S1_at--484--4111Chr08:15582918..15582942 (25 bp)
CGAACAATTGCCTGACTCTGAGAAA
LOC_Os08g25820
OsAffx.5926.1.S1_at--13--9011Chr08:15582972..15582996 (25 bp)
TGAATCTCCAGTTCAGGGTGCACCC
LOC_Os08g25820
OsAffx.5926.1.S1_at--510--7711Chr08:15582987..15583011 (25 bp)
GGGTGCACCCCATAGCAAGAACAGT
LOC_Os08g25820
OsAffx.5926.1.S1_at--320--2811Chr08:15583019..15583043 (25 bp)
AAGTTGAGCCGACGAAGAGCCCTTC
LOC_Os08g25820
OsAffx.5926.1.S1_at--826--8851Chr08:15583047..15583071 (25 bp)
TGATGATGCTCTCCCGTGTGGTGAA
LOC_Os08g25820
OsAffx.5926.1.S1_at--569--4551Chr08:15583118..15583142 (25 bp)
GCCCAAAGCATGAGCGTGCAGCCAA
LOC_Os08g25820
Target Sequence 
AGATCCAGGGAATCTGCTTTCTGCACTTGAAGGTTCATCTGGAATGCAGATATCTGAAGCCCTGAAGCTGCAGATGGAGG
TCCAGAAGCGGCTACATGAACAATTAGAGGTGCAAAGGCAGCTACAGCTGCGAATTGAGGCGCAGGGGAAGTATCTCCAG
AAGATCATCGAAGAGCAGCAGCGTGTCATTGGTGCAGGAGCTTCCAGAGCCACGTCAAGCGAACAATTGCCTGACTCTGA
GAAAACTAACCCACCAACTCCAGTACCAATTTCTGAATCTCCAGTTCAGGGTGCACCCCATAGCAAGAACAGTCAAAGCC
AAGTTGAGCCGACGAAGAGCCCTTCGCATGATGATGCTCTCCCGTGTGGTGAACCTTTAACACCTGACTCCAGCTGCCGG
CCTGGTTCACCGACGCTCAGCCCAAAGCATGAGCGTGCAGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5926.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis