Browse Element(s) Details


OsAffx.6057.1.S1_s_at

Description tigr:9636.m03752
TID=OsAffx.6057.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Mitochondrial carrier protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3737011/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37350Os.11306.1.S1_at11/118+23460857..23468289Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g37360OsAffx.17377.1.S1_at11/118+23471844..23472276hypothetical protein
LOC_Os08g37370OsAffx.6057.1.S1_s_at11/118+23480252..23481735Mitochondrial carrier protein, expressed
LOC_Os08g37370Os.7930.1.S1_x_at11/118+23480252..23481735Mitochondrial carrier protein, expressed
LOC_Os08g37380Os.23365.1.S1_at11/118+23490237..23495714Glucose-6-phosphate isomerase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005488molecular_functionbinding
GO:0017077molecular_functionoxidative phosphorylation uncoupler activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6057.1.S1_s_at--464--8251Chr08:23480478..23480502 (25 bp)
GGCGTCGAGTTCTAAAGGCCACCGC
LOC_Os08g37370
OsAffx.6057.1.S1_s_at--869--7211Chr08:23480475..23480499 (25 bp)
GTCGAGTTCTAAAGGCCACCGCCAC
LOC_Os08g37370
OsAffx.6057.1.S1_s_at--1162--10511Chr08:23480469..23480493 (25 bp)
TTCTAAAGGCCACCGCCACGATGAT
LOC_Os08g37370
OsAffx.6057.1.S1_s_at--605--5791Chr08:23480441..23480465 (25 bp)
GACGAACAATCCACCTCTAGTATTA
LOC_Os08g37370
OsAffx.6057.1.S1_s_at--863--2231Chr08:23480436..23480460 (25 bp)
ACAATCCACCTCTAGTATTACTTCT
LOC_Os08g37370
OsAffx.6057.1.S1_s_at--33--591Chr08:23480433..23480457 (25 bp)
ATCCACCTCTAGTATTACTTCTGCT
LOC_Os08g37370
OsAffx.6057.1.S1_s_at--676--6051Chr08:23480349..23480373 (25 bp)
GAGATTGTACCTTAGCCTGCCTCCC
LOC_Os08g37370
OsAffx.6057.1.S1_s_at--215--3811Chr08:23480329..23480353 (25 bp)
CTCCCCATGGCATATGTTCCTTCTG
LOC_Os08g37370
OsAffx.6057.1.S1_s_at--626--6691Chr08:23480314..23480338 (25 bp)
GTTCCTTCTGTTCCTGCATTCGAAC
LOC_Os08g37370
OsAffx.6057.1.S1_s_at--34--3651Chr08:23480310..23480334 (25 bp)
CTTCTGTTCCTGCATTCGAACGAAT
LOC_Os08g37370
OsAffx.6057.1.S1_s_at--989--8751Chr08:23480306..23480330 (25 bp)
TGTTCCTGCATTCGAACGAATTTGG
LOC_Os08g37370
Target Sequence 
GGCGTCGAGTTCTAAAGGCCACCGCCACGATGATGACGACGAACAATCCACCTCTAGTATTACTTCTGCTAGTACTACCT
CTGCTGCTGATGCTGCTGCTATGAATAATTACTACTACAGCCTGGTTGAGAGATTGTACCTTAGCCTGCCTCCCCATGGC
ATATGTTCCTTCTGTTCCTGCATTCGAACGAATTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6057.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis