Browse Element(s) Details


OsAffx.6071.1.S1_at

Description tigr:9636.m03889
TID=OsAffx.6071.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=MADS-box protein, GSQUA1, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3859011/11SRF-type transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38520OsAffx.29591.1.S1_at11/118+24233129..24233974F-box domain containing protein
LOC_Os08g38520OsAffx.29591.1.S1_x_at11/118+24233129..24233974F-box domain containing protein
LOC_Os08g38530Os.15237.1.S1_at3/118+24234688..24236129hypothetical protein
LOC_Os08g38540OsAffx.17405.1.S1_at10/118+24237384..24239114hypothetical protein
LOC_Os08g38550OsAffx.6070.1.S1_at9/118+24239968..24243475hypothetical protein
LOC_Os08g38560Os.7659.1.S1_s_at5/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38560Os.56750.1.S1_at5/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38560OsAffx.30096.1.S1_x_at1/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38560Os.56726.1.S1_x_at1/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38570Os.19179.1.S1_at11/118+24251527..24256259transducin family protein, putative, expressed
LOC_Os08g38580Os.57036.1.S1_at11/118+24256547..24257619Harpin-induced protein 1 containing protein, expressed
LOC_Os08g38590OsAffx.6071.1.S1_at11/118+24258787..24261024SRF-type transcription factor family protein, expressed
LOC_Os08g38600Os.10254.1.S1_at11/118+24265096..24268481Copine family protein, expressed
LOC_Os08g38610OsAffx.6072.1.S1_at10/118+24269343..24273295pentatricopeptide, putative
LOC_Os08g38620Os.14799.1.S1_at11/118+24274864..24279963expressed protein
LOC_Os08g38630OsAffx.17407.1.S1_at11/118+24281436..24282002hypothetical protein
LOC_Os08g38640NANA8+24283586..24287882retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0048440biological_processcarpel development
GO:0048443biological_processstamen development
GO:0048481biological_processovule development
GO:0048497biological_processmaintenance of floral organ identity
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6071.1.S1_at--547--10791Chr08:24259690..24259714 (25 bp)
TTGTTGAGCAGTCACATGGCGCCGT
LOC_Os08g38590
OsAffx.6071.1.S1_at--488--871Chr08:24259675..24259699 (25 bp)
ATGGCGCCGTTCGATGCAACGACAG
LOC_Os08g38590
OsAffx.6071.1.S1_at--139--6331Chr08:24259663..24259687 (25 bp)
GATGCAACGACAGCTGCGATGCAGG
LOC_Os08g38590
OsAffx.6071.1.S1_at--189--811Chr08:24259544..24259568 (25 bp)
ATGGGACGCAGATGTACGTGAGCCA
LOC_Os08g38590
OsAffx.6071.1.S1_at--634--1891Chr08:24259503..24259527 (25 bp)
ACGTTCGGTGGTGACGCTGCCATGT
LOC_Os08g38590
OsAffx.6071.1.S1_at--832--7971Chr08:24259459..24259483 (25 bp)
GGATCCTGGCCATCCGATGTTCAGT
LOC_Os08g38590
OsAffx.6071.1.S1_at--154--6291Chr08:24259444..24259468 (25 bp)
GATGTTCAGTGCATCTGATCCGTTG
LOC_Os08g38590
OsAffx.6071.1.S1_at--288--3551Chr08:24259433..24259457 (25 bp)
CATCTGATCCGTTGATCTACCTCAG
LOC_Os08g38590
OsAffx.6071.1.S1_at--808--9631Chr08:24259338..24259362 (25 bp)
TCAGGGACCACGACGTGTACGACGC
LOC_Os08g38590
OsAffx.6071.1.S1_at--966--7431Chr08:24259324..24259348 (25 bp)
GTGTACGACGCCAACTCACAGGTGG
LOC_Os08g38590
OsAffx.6071.1.S1_at--395--1891Chr08:24258922..24258946 (25 bp)
ACGTTCCCAGCGACGAGAACTCCGG
LOC_Os08g38590
Target Sequence 
TTGTTGAGCAGTCACATGGCGCCGTTCGATGCAACGACAGCTGCGATGCAGGGTGCAGATGGGACGCAGATGTACGTGAG
CCAGGCGGACGGGTTGGCCACGTTCGGTGGTGACGCTGCCATGTGGGGCCCAGATGGAGGCGCGGATCCTGGCCATCCGA
TGTTCAGTGCATCTGATCCGTTGATCTACCTCAGGGACCACGACGTGTACGACGCCAACTCACAGGTGGCCGGGCTGCAC
GGCGGCGACCCGTGCGCGGCCGGCGGCGCCGCGGCGGCGGCGGCCGCGGTGGGGTGCGTCGACGACGACGTCGCCGGAGG
CCACGCCGCCGCCGCCGACGCGTGGAGGCAGGCGTACACCTGCACCGAGCTGCTCTCCACGCTCATCCCCACCACGCCGT
TCCCCCTCATGCCGCATTGCCTGGGGCCGGAGGACCAGTACCTGTCGATGGAGCATGGCATGGTGGCGGCGGCGCAGGAG
CCGGTGGAGGCGTCGACGGCGAGCTGCTCCTACGTTCCCAGCGACGAGAACTCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6071.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis