Browse Element(s) Details


OsAffx.6225.1.S1_at

Description tigr:9637.m00797
TID=OsAffx.6225.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g103709/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10350NANA9+5654552..5656370Transposable element protein, putative, MuDR
LOC_Os09g10360NANA9+5656883..5660134hypothetical protein
LOC_Os09g10370OsAffx.6225.1.S1_at9/119+5677215..5678699hypothetical protein
LOC_Os09g10380OsAffx.17632.1.S1_at11/119+5680007..5680749transposon protein, putative, unclassified, expressed
LOC_Os09g10390OsAffx.5954.1.S1_x_at2/119+5683077..5685877hypothetical protein
LOC_Os09g10390OsAffx.5954.2.S1_at1/119+5683077..5685877hypothetical protein
LOC_Os09g10400NANA9+5686319..5687023transposon protein, putative, unclassified
LOC_Os09g10410OsAffx.5954.5.S1_x_at5/119+5689795..5691618retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g10420OsAffx.29791.1.S1_at11/119+5695108..5696468expressed protein
LOC_Os09g10420OsAffx.29791.2.S1_s_at11/119+5695108..5696468expressed protein
LOC_Os09g10420OsAffx.29791.1.S1_x_at11/119+5695108..5696468expressed protein
LOC_Os09g10420OsAffx.29791.2.S1_x_at1/119+5695108..5696468expressed protein
LOC_Os09g10430OsAffx.29791.2.S1_x_at11/119+5696737..5698278hypothetical protein
LOC_Os09g10430OsAffx.29791.2.S1_s_at11/119+5696737..5698278hypothetical protein
LOC_Os09g10430OsAffx.29791.1.S1_x_at3/119+5696737..5698278hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6225.1.S1_at--847--9771NONE
TAAGGAGAGGGAGTGTCCACCAGAA
NONE
OsAffx.6225.1.S1_at--105--6131Chr09:5678158..5678181 (24 bp)
GAGTGTCCACCAGAAGTCTTCTCAA
LOC_Os09g10370
OsAffx.6225.1.S1_at--246--7151Chr09:5678143..5678167 (25 bp)
GTCTTCTCAAGCAAATTCACGTTCT
LOC_Os09g10370
OsAffx.6225.1.S1_at--380--4031Chr09:5678124..5678148 (25 bp)
CGTTCTTGCAACGTCTGCCAGTAAA
LOC_Os09g10370
OsAffx.6225.1.S1_at--310--2591Chr09:5678115..5678139 (25 bp)
AACGTCTGCCAGTAAAGGCCATATG
LOC_Os09g10370
OsAffx.6225.1.S1_at--19--891Chr09:5678100..5678124 (25 bp)
AGGCCATATGTTTTGAGTGTCCTAT
LOC_Os09g10370
OsAffx.6225.1.S1_at--838--10751NONE
TTGAGTGTCCTATAATGCGGTGTGG
NONE
OsAffx.6225.1.S1_at--553--7391Chr09:5677325..5677349 (25 bp)
GTGATGCCCGACTGTGTTGCCCTGG
LOC_Os09g10370
OsAffx.6225.1.S1_at--918--4191Chr09:5677306..5677330 (25 bp)
CCCTGGTGGCCAAGTGTGCCAGTGT
LOC_Os09g10370
OsAffx.6225.1.S1_at--339--8251Chr09:5677263..5677287 (25 bp)
GGCACTGTTGCCCAACCACAGGGAT
LOC_Os09g10370
OsAffx.6225.1.S1_at--16--10691Chr09:5677256..5677280 (25 bp)
TTGCCCAACCACAGGGATGCCCATG
LOC_Os09g10370
Target Sequence 
TAAGGAGAGGGAGTGTCCACCAGAAGTCTTCTCAAGCAAATTCACGTTCTTGCAACGTCTGCCAGTAAAGGCCATATGTT
TTGAGTGTCCTATAATGCGGTGTGGGTGGTCCCAGGGGGTGATGCCCGACTGTGTTGCCCTGGTGGCCAAGTGTGCCAGT
GTGGTGTGGGGTGGTCTAGGGGCACTGTTGCCCAACCACAGGGATGCCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6225.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis