Browse Element(s) Details


OsAffx.6227.1.S1_at

Description tigr:9637.m00823
TID=OsAffx.6227.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1063011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10570OsAffx.17636.1.S1_at10/119+5764327..5769170hypothetical protein
LOC_Os09g10580OsAffx.29793.1.S1_at11/119+5770360..5771539hypothetical protein
LOC_Os09g10600Os.27167.1.S1_at11/119+5780840..5784946Enoyl, chloroplast precursor, putative, expressed
LOC_Os09g10610OsAffx.21037.1.S1_at1/119+5785893..5787455hypothetical protein
LOC_Os09g10620NANA9+5788801..5789358hypothetical protein
LOC_Os09g10630OsAffx.6227.1.S1_at11/119+5792544..5792972hypothetical protein
LOC_Os09g10640NANA9+5795957..5796607retrotransposon protein, putative, LINE subclass
LOC_Os09g10650NANA9+5799256..5805941Phosphatidylinositol-4-phosphate 5-Kinase family protein
LOC_Os09g10660OsAffx.17637.1.S1_at11/119+5816870..5818446hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6227.1.S1_at--363--3931Chr09:5792607..5792631 (25 bp)
CGGCGCGACACAAGAAGACAAGGAA
LOC_Os09g10630
OsAffx.6227.1.S1_at--610--5751Chr09:5792672..5792696 (25 bp)
GACGTGCACATGTCGCAGAGCCACC
LOC_Os09g10630
OsAffx.6227.1.S1_at--348--7691Chr09:5792744..5792768 (25 bp)
GGGTTTGCCATCGACCGATGCGGCA
LOC_Os09g10630
OsAffx.6227.1.S1_at--728--8251Chr09:5792765..5792789 (25 bp)
GGCAGCGGAGATCTCAACTCGTCGC
LOC_Os09g10630
OsAffx.6227.1.S1_at--608--9291Chr09:5792790..5792814 (25 bp)
TCCGACACCGCCAGACTGAGAAGAT
LOC_Os09g10630
OsAffx.6227.1.S1_at--468--5711Chr09:5792803..5792827 (25 bp)
GACTGAGAAGATGGCTCCGGGCTAA
LOC_Os09g10630
OsAffx.6227.1.S1_at--987--9271Chr09:5792818..5792842 (25 bp)
TCCGGGCTAAGCTGGCCGTGGCCAA
LOC_Os09g10630
OsAffx.6227.1.S1_at--295--871Chr09:5792859..5792883 (25 bp)
ATGGCGGCCGAGATATCGTTGCTCA
LOC_Os09g10630
OsAffx.6227.1.S1_at--800--251Chr09:5792871..5792895 (25 bp)
ATATCGTTGCTCAAGTCTGTCGTTG
LOC_Os09g10630
OsAffx.6227.1.S1_at--449--9091Chr09:5792878..5792902 (25 bp)
TGCTCAAGTCTGTCGTTGGGTCAAC
LOC_Os09g10630
OsAffx.6227.1.S1_at--549--1851Chr09:5792901..5792925 (25 bp)
ACGAAGGATGCCATCGTCACGAGGA
LOC_Os09g10630
Target Sequence 
CGGCGCGACACAAGAAGACAAGGAACTGTGGCGAGGACGGGCACCGGGGGATCTGGTTTGAGCGGGACGTGCACATGTCG
CAGAGCCACCCGCTGCTCCCTTCACTCCGAGGCATCCTCGCCATCGATGCCGTCGTCGGGTTTGCCATCGACCGATGCGG
CAGCGGAGATCTCAACTCGTCGCTCCGACACCGCCAGACTGAGAAGATGGCTCCGGGCTAAGCTGGCCGTGGCCAAGAAC
CGCCTCGCCGGGATGGCGGCCGAGATATCGTTGCTCAAGTCTGTCGTTGGGTCAACGAAGGATGCCATCGTCACGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6227.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis