Browse Element(s) Details


OsAffx.6248.1.S1_at

Description tigr:9637.m00942
TID=OsAffx.6248.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1224011/11Serine/threonine-protein kinase BRI1-like 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12220OsAffx.17658.1.S1_at10/119+6927625..6928805hypothetical protein
LOC_Os09g12230Os.50948.1.S1_at11/119+6946873..6949913Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os09g12240OsAffx.6248.1.S1_at11/119+6951229..6957911Serine/threonine-protein kinase BRI1-like 1 precursor, putative, expressed
LOC_Os09g12250OsAffx.17660.1.S1_at11/119+6974494..6977083hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009556biological_processmicrosporogenesis
GO:0009729biological_processdetection of brassinosteroid stimulus
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0009826biological_processunidimensional cell growth
GO:0010234biological_processtapetal cell fate specification
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
GO:0042803molecular_functionprotein homodimerization activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6248.1.S1_at--46--6491Chr09:6954689..6954713 (25 bp)
GATACGCATCTGAGTGTGAGCACAC
LOC_Os09g12240
OsAffx.6248.1.S1_at--312--8911Chr09:6954673..6954697 (25 bp)
TGAGCACACTTGCAGGTACACCTGG
LOC_Os09g12240
OsAffx.6248.1.S1_at--1069--9191Chr09:6954643..6954667 (25 bp)
TGCCACCTGAGTACTACCAAAGCTT
LOC_Os09g12240
OsAffx.6248.1.S1_at--60--10871Chr09:6954572..6954596 (25 bp)
TTGGAGCTCCTCTCAGGTAAGAAGC
LOC_Os09g12240
OsAffx.6248.1.S1_at--692--5411Chr09:6954552..6954576 (25 bp)
GAAGCCAATTGATCCGACTGAGTTT
LOC_Os09g12240
OsAffx.6248.1.S1_at--927--1271Chr09:6954469..6954493 (25 bp)
AGATCTTTGATCCTACATTGACTGA
LOC_Os09g12240
OsAffx.6248.1.S1_at--643--5391Chr09:6954431..6954455 (25 bp)
GAAGCAGAGCTCTATCAGTACCTGA
LOC_Os09g12240
OsAffx.6248.1.S1_at--357--5291Chr09:6954370..6954394 (25 bp)
GAAGGCCAACCATGATTCAGGTCAT
LOC_Os09g12240
OsAffx.6248.1.S1_at--880--2771Chr09:6954334..6954358 (25 bp)
AAGAGCTGCAGCTTGACTCGGACAG
LOC_Os09g12240
OsAffx.6248.1.S1_at--1014--5651Chr09:6954314..6954338 (25 bp)
GACAGTGATATCCTCGATGGCTTTT
LOC_Os09g12240
OsAffx.6248.1.S1_at--138--6231Chr09:6954299..6954323 (25 bp)
GATGGCTTTTCGATCAATTCGTCAA
LOC_Os09g12240
Target Sequence 
GATACGCATCTGAGTGTGAGCACACTTGCAGGTACACCTGGGTATGTGCCACCTGAGTACTACCAAAGCTTCAGGTGCAC
GACCAAAGGCGACGTCTACAGCTATGGTGTTGTGCTCTTGGAGCTCCTCTCAGGTAAGAAGCCAATTGATCCGACTGAGT
TTGGAGACAACAACCTTGTTGGTTGGGTGAAGCAGATGGTTAAAGAGAACAGAAGCAGTGAGATCTTTGATCCTACATTG
ACTGATAGAAAATCAGGGGAAGCAGAGCTCTATCAGTACCTGAAGATTGCATGCGAGTGCTTGGATGATCGACCCAACCG
AAGGCCAACCATGATTCAGGTCATGGCAATGTTCAAAGAGCTGCAGCTTGACTCGGACAGTGATATCCTCGATGGCTTTT
CGATCAATTCGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6248.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis