Browse Element(s) Details


OsAffx.6269.1.S1_at

Description tigr:9637.m01152
TID=OsAffx.6269.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1444011/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g14410Os.52217.1.S1_at11/119+8509839..8515543NB-ARC domain containing protein, expressed
LOC_Os09g14420NANA9+8518840..8519247hypothetical protein
LOC_Os09g14430NANA9+8523346..8530953transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g14440OsAffx.6269.1.S1_at11/119+8531055..8534150transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g14440Os.14491.2.S1_x_at1/119+8531055..8534150transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g14440Os.47463.1.S1_x_at1/119+8531055..8534150transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g14450OsAffx.6270.1.S1_s_at11/119+8536184..8541199NB-ARC domain containing protein, expressed
LOC_Os09g14450OsAffx.6270.1.S1_at11/119+8536184..8541199NB-ARC domain containing protein, expressed
LOC_Os09g14460NANA9+8548608..8549698hypothetical protein
LOC_Os09g14470NANA9+8551277..8555712retrotransposon protein, putative, unclassified
LOC_Os09g14480OsAffx.10091.1.S1_at1/119+8557251..8562773transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6269.1.S1_at--656--6151Chr09:8533656..8533680 (25 bp)
GAGGTTATCACGTCACTGAAAACTT
LOC_Os09g14440
OsAffx.6269.1.S1_at--522--2391Chr09:8533675..8533699 (25 bp)
AAACTTCAGCCGTTAATGAGATAGC
LOC_Os09g14440
OsAffx.6269.1.S1_at--824--6031Chr09:8533692..8533716 (25 bp)
GAGATAGCTAAATTGGTGTGTGTCA
LOC_Os09g14440
OsAffx.6269.1.S1_at--411--6151Chr09:8533724..8533748 (25 bp)
GATCAAGAACCTCACCGTAACATTT
LOC_Os09g14440
OsAffx.6269.1.S1_at--643--7051Chr09:8533740..8533764 (25 bp)
GTAACATTTGACGATATCTGTGCTC
LOC_Os09g14440
OsAffx.6269.1.S1_at--257--491Chr09:8533755..8533779 (25 bp)
ATCTGTGCTCAAATAAGAGGCGCAG
LOC_Os09g14440
OsAffx.6269.1.S1_at--901--8391Chr09:8533773..8533797 (25 bp)
GGCGCAGACCAGATTGTTGCACACT
LOC_Os09g14440
OsAffx.6269.1.S1_at--725--5111Chr09:8533791..8533815 (25 bp)
GCACACTCTGAAGCAACAAACTACA
LOC_Os09g14440
OsAffx.6269.1.S1_at--252--3251Chr09:8533820..8533844 (25 bp)
CAAGCTGCTGAGAGAATATGCCTAT
LOC_Os09g14440
OsAffx.6269.1.S1_at--467--8252Chr09:8533847..8533871 (25 bp)
GGCAGAAAACATCATCGATCTCTTC
LOC_Os09g14440
OsAffx.6269.1.S1_at--309--4051Chr09:8533862..8533886 (25 bp)
CGATCTCTTCAGTATTGAACTTGGG
LOC_Os09g14440
Target Sequence 
GAGGTTATCACGTCACTGAAAACTTCAGCCGTTAATGAGATAGCTAAATTGGTGTGTGTCAAAAAGGAGATCAAGAACCT
CACCGTAACATTTGACGATATCTGTGCTCAAATAAGAGGCGCAGACCAGATTGTTGCACACTCTGAAGCAACAAACTACA
GGCTCAAGCTGCTGAGAGAATATGCCTATGAGGCAGAAAACATCATCGATCTCTTCAGTATTGAACTTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6269.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis