Browse Element(s) Details


OsAffx.6276.1.S1_at

Description tigr:9637.m01205
TID=OsAffx.6276.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1486010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g14830NANA9+8837492..8843647transposon protein, putative, unclassified
LOC_Os09g14840NANA9+8844290..8845939retrotransposon protein, putative, unclassified
LOC_Os09g14850OsAffx.30350.1.S1_at2/119+8857599..8862586retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g14860OsAffx.6276.1.S1_at10/119+8863337..8866726hypothetical protein
LOC_Os09g14870OsAffx.18887.1.S1_at3/119+8867795..8872867hypothetical protein
LOC_Os09g14870OsAffx.19675.1.S1_at3/119+8867795..8872867hypothetical protein
LOC_Os09g14870OsAffx.19675.1.S1_x_at3/119+8867795..8872867hypothetical protein
LOC_Os09g14880Os.53978.1.S1_at11/119+8878453..8882844transposon protein, putative, Pong sub-class, expressed
LOC_Os09g14890OsAffx.24469.1.S1_x_at11/119+8888532..8889134hypothetical protein
LOC_Os09g14890OsAffx.24469.1.S1_at11/119+8888532..8889134hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6276.1.S1_at--836--5531Chr09:8864406..8864430 (25 bp)
GAAACCGCTTCAACGGAGGCGCAGC
LOC_Os09g14860
OsAffx.6276.1.S1_at--565--1631Chr09:8864384..8864408 (25 bp)
AGCGGTTCACGCAGGATATGTCGAA
LOC_Os09g14860
OsAffx.6276.1.S1_at--369--7231Chr09:8864365..8864389 (25 bp)
GTCGAAAGCCACTGAATCTGCCAAG
LOC_Os09g14860
OsAffx.6276.1.S1_at--260--10531Chr09:8864259..8864283 (25 bp)
TTCACCTTCTCGGAGTGGACACAAC
LOC_Os09g14860
OsAffx.6276.1.S1_at--658--3271NONE
CAACAGGCTGGTGGGTTTTCGCCGA
NONE
OsAffx.6276.1.S1_at--532--4091Chr09:8863572..8863596 (25 bp)
CGAAAGGTGTATGTTCGGCCTCCTT
LOC_Os09g14860
OsAffx.6276.1.S1_at--999--2591Chr09:8863501..8863525 (25 bp)
AACCTGCCGAAGATTAAGTATTCCT
LOC_Os09g14860
OsAffx.6276.1.S1_at--819--2831Chr09:8863486..8863510 (25 bp)
AAGTATTCCTGTCGCGAGATGATAA
LOC_Os09g14860
OsAffx.6276.1.S1_at--888--9231Chr09:8863408..8863432 (25 bp)
TCCATGTGGAACGTCAGGAGGACAT
LOC_Os09g14860
OsAffx.6276.1.S1_at--100--2133Chr09:8863387..8863411 (25 bp)
ACATGGCCCGCTTTTGGCGAAATCA
LOC_Os09g14860
OsAffx.6276.1.S1_at--545--5591Chr09:8863369..8863393 (25 bp)
GAAATCACCGAAGGACTGATCGCTA
LOC_Os09g14860
Target Sequence 
GAAACCGCTTCAACGGAGGCGCAGCGGTTCACGCAGGATATGTCGAAAGCCACTGAATCTGCCAAGACCGTGTGCCGTAC
GCTTCGCCTTGCCCTTACTGACATGGGGGCGAGGGTGCGAGGAGTCCCTGGCGAAGATGCTTCTGCCTTCACCTTCTCGG
AGTGGACACAACAGGCTGGTGGGTTTTCGCCGAAAGGTGTATGTTCGGCCTCCTTTTGGGGATTGGCGGAACAAGAATGT
GAGAAATTCGTCACGGTTAAAAACCTGCCGAAGATTAAGTATTCCTGTCGCGAGATGATAATAAACGCCAAAAGCGGGCA
CACCCCGGGTGAACCCTGGACGACTACGATCATGTCCATGTGGAACGTCAGGAGGACATGGCCCGCTTTTGGCGAAATCA
CCGAAGGACTGATCGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6276.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis