Browse Element(s) Details


OsAffx.6312.1.S1_at

Description tigr:9637.m01448
TID=OsAffx.6312.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1707011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17030NANA9+10435661..10441366retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g17040Os.46306.1.S1_x_at2/119+10445721..10447432transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17050OsAffx.6311.1.S1_at11/119+10450160..10452082hypothetical protein
LOC_Os09g17060OsAffx.17750.1.S1_at11/119+10453365..10453628hypothetical protein
LOC_Os09g17070OsAffx.6312.1.S1_at11/119+10460248..10461402hypothetical protein
LOC_Os09g17080NANA9+10462222..10463181F-box domain containing protein
LOC_Os09g17089NANA9+10467745..10469297NA
LOC_Os09g17100OsAffx.17752.1.S1_at11/119+10472904..10473604hypothetical protein
LOC_Os09g17110OsAffx.29884.1.S1_at11/119+10476590..10481004Protein kinase domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6312.1.S1_at--305--7911Chr09:10460802..10460826 (25 bp)
TGTTATCCCGGAGGAACCCAATGGT
LOC_Os09g17070
OsAffx.6312.1.S1_at--729--7151Chr09:10460761..10460785 (25 bp)
GTCTAGGAGGTTTCATCGTCATCGT
LOC_Os09g17070
OsAffx.6312.1.S1_at--657--511Chr09:10460747..10460771 (25 bp)
ATCGTCATCGTGGTAGCGTCATTGG
LOC_Os09g17070
OsAffx.6312.1.S1_at--431--231Chr09:10460722..10460746 (25 bp)
ATATATGGCCCTTCTCACTGTAGTT
LOC_Os09g17070
OsAffx.6312.1.S1_at--355--2831Chr09:10460691..10460715 (25 bp)
AAGTTCTACACTGGGCTTGGTGATA
LOC_Os09g17070
OsAffx.6312.1.S1_at--601--8031Chr09:10460554..10460578 (25 bp)
GGAGTTGTTCAGCTTGTTCTTTTAC
LOC_Os09g17070
OsAffx.6312.1.S1_at--269--10351Chr09:10460534..10460558 (25 bp)
TTTACCCTCCAATGACATGTCCTAA
LOC_Os09g17070
OsAffx.6312.1.S1_at--52--5931Chr09:10460432..10460456 (25 bp)
GAGCATTTTTTGTCAATAGCACCAA
LOC_Os09g17070
OsAffx.6312.1.S1_at--1011--9071Chr09:10460406..10460430 (25 bp)
TGCTTTGGAGCATCGGTCAGCGCAA
LOC_Os09g17070
OsAffx.6312.1.S1_at--836--8511Chr09:10460309..10460333 (25 bp)
TGGAACGTGGAACCACTGCTGCACT
LOC_Os09g17070
OsAffx.6312.1.S1_at--1016--4751Chr09:10460292..10460316 (25 bp)
GCTGCACTCAATCCCGGTGAAGATT
LOC_Os09g17070
Target Sequence 
TGTTATCCCGGAGGAACCCAATGGTTTAAGCATGAGTATCAGTCTAGGAGGTTTCATCGTCATCGTGGTAGCGTCATTGG
ATATATGGCCCTTCTCACTGTAGTTGGGGGTAAGTTCTACACTGGGCTTGGTGATAGTGTCATAACACTAGACTTCTCCC
CAAATCCAAAGTTTGATATTATTCCTATTAAAGCGGTACAAAATCCAATGTACAACTTTTCAAGACTCTATTTGTTAGAA
TCAAGTGGGGAGTTGTTCAGCTTGTTCTTTTACCCTCCAATGACATGTCCTAAAAGAATAGCAGAGATTGAAGTTTACAA
GCTGGACATACCAAGAAGAGCATGGGTGAAGGTGTACACACTTGGTGATAGAGCATTTTTTGTCAATAGCACCAAGTGCT
TTGGAGCATCGGTCAGCGCAAAAGAAGCTTGTCTAGAGGAAAACTGCATTTATTTTTCGAGGACCGGGGACAAGGGACTA
TATGTTCATAGTATGGAACGTGGAACCACTGCTGCACTCAATCCCGGTGAAGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6312.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis