Browse Element(s) Details


OsAffx.6329.1.S1_at

Description tigr:9637.m01626
TID=OsAffx.6329.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1932011/11hypothetical protein
LOC_Os01g408302/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19280NANA9+11539746..11542435retrotransposon protein, putative, unclassified
LOC_Os09g19290NANA9+11542985..11549253retrotransposon protein, putative, unclassified, expressed
LOC_Os09g19300NANA9+11549879..11552815retrotransposon protein, putative, unclassified, expressed
LOC_Os09g19310OsAffx.17779.1.S1_x_at2/119+11553937..11555179retrotransposon protein, putative, unclassified, expressed
LOC_Os09g19310OsAffx.17779.1.S1_at1/119+11553937..11555179retrotransposon protein, putative, unclassified, expressed
LOC_Os09g19320OsAffx.6329.1.S1_at11/119+11558552..11559102hypothetical protein
LOC_Os09g19330OsAffx.17779.1.S1_x_at11/119+11562901..11564176Stripe rust resistance protein Yr10, putative
LOC_Os09g19330OsAffx.17779.1.S1_at11/119+11562901..11564176Stripe rust resistance protein Yr10, putative
LOC_Os09g19340OsAffx.29922.1.S1_at11/119+11566994..11568754hypothetical protein
LOC_Os09g19350Os.27174.1.A1_at2/119+11575043..11581853Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6329.1.S1_at--87--1774Chr09:11558595..11558619 (25 bp)
ACCTGCCAGATCAATGCGTGGGCTA
LOC_Os09g19320
OsAffx.6329.1.S1_at--666--1274Chr11:8002877..8002901 (25 bp)
AGATCAATGCGTGGGCTATTTAGGG
NONE
OsAffx.6329.1.S1_at--228--8052Chr11:8002914..8002938 (25 bp)
GGAGAACGGAAGCACCCATCCTCTG
NONE
OsAffx.6329.1.S1_at--1069--8791Chr09:11558662..11558686 (25 bp)
TGTTCCCACGCATGCGACGATGCAC
LOC_Os09g19320
OsAffx.6329.1.S1_at--1032--4291Chr09:11558697..11558721 (25 bp)
CCTCATGCTCGTTGCGGCAATGTTC
LOC_Os09g19320
OsAffx.6329.1.S1_at--828--10691Chr09:11558708..11558732 (25 bp)
TTGCGGCAATGTTCCACCAAATCAT
LOC_Os09g19320
OsAffx.6329.1.S1_at--755--3371Chr09:11558722..11558746 (25 bp)
CACCAAATCATCCTCTTACAAGTTC
LOC_Os09g19320
OsAffx.6329.1.S1_at--298--7591Chr09:11558751..11558775 (25 bp)
GGGCAGCTCGTCGTGCACAGGCAAA
LOC_Os09g19320
OsAffx.6329.1.S1_at--249--4812Chr09:11558756..11558780 (25 bp)
GCTCGTCGTGCACAGGCAAAGGCAA
LOC_Os09g19320
OsAffx.6329.1.S1_at--671--5132Chr11:8003046..8003070 (25 bp)
GCAAAGGCAAGCATCTCCAACTCTG
NONE
OsAffx.6329.1.S1_at--762--2712Chr11:8003054..8003078 (25 bp)
AAGCATCTCCAACTCTGCTTTTCTG
NONE
Target Sequence 
ACCTGCCAGATCAATGCGTGGGCTATTTAGGGCGGGATCATGCGGGAGAACGGAAGCACCCATCCTCTGTTCCCACGCAT
GCGACGATGCACCCCTCGTCTTCCTCATGCTCGTTGCGGCAATGTTCCACCAAATCATCCTCTTACAAGTTCAGAGGGGC
AGCTCGTCGTGCACAGGCAAAGGCAAGCATCTCCAACTCTGCTTTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6329.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis