Browse Element(s) Details


OsAffx.29922.1.S1_at

Description tigr:9637.m01628
TID=OsAffx.29922.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1934011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19280NANA9+11539746..11542435retrotransposon protein, putative, unclassified
LOC_Os09g19290NANA9+11542985..11549253retrotransposon protein, putative, unclassified, expressed
LOC_Os09g19300NANA9+11549879..11552815retrotransposon protein, putative, unclassified, expressed
LOC_Os09g19310OsAffx.17779.1.S1_x_at2/119+11553937..11555179retrotransposon protein, putative, unclassified, expressed
LOC_Os09g19310OsAffx.17779.1.S1_at1/119+11553937..11555179retrotransposon protein, putative, unclassified, expressed
LOC_Os09g19320OsAffx.6329.1.S1_at11/119+11558552..11559102hypothetical protein
LOC_Os09g19330OsAffx.17779.1.S1_x_at11/119+11562901..11564176Stripe rust resistance protein Yr10, putative
LOC_Os09g19330OsAffx.17779.1.S1_at11/119+11562901..11564176Stripe rust resistance protein Yr10, putative
LOC_Os09g19340OsAffx.29922.1.S1_at11/119+11566994..11568754hypothetical protein
LOC_Os09g19350Os.27174.1.A1_at2/119+11575043..11581853Protein kinase domain containing protein, expressed
LOC_Os09g19360OsAffx.29921.2.S1_at9/119+11586115..11587841Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29922.1.S1_at--203--7611Chr09:11567530..11567643 (25 bp)
GGGCAAGCTTCTGTCCCAGTGGCCT
LOC_Os09g19340
OsAffx.29922.1.S1_at--882--4291Chr09:11567478..11567502 (25 bp)
CCTACCGATTGCTCACCGTGCGGAG
LOC_Os09g19340
OsAffx.29922.1.S1_at--802--8591Chr09:11567363..11567387 (25 bp)
TGGGTGGCGACATGCGGGAGCGGGT
LOC_Os09g19340
OsAffx.29922.1.S1_at--102--1631Chr09:11567345..11567369 (25 bp)
AGCGGGTGGTAGACGGCGGCACCGT
LOC_Os09g19340
OsAffx.29922.1.S1_at--138--7571Chr09:11567248..11567272 (25 bp)
GGGCGCACAGGCTGGCACAACGCCA
LOC_Os09g19340
OsAffx.29922.1.S1_at--144--2131Chr09:11567242..11567266 (25 bp)
ACAGGCTGGCACAACGCCACAGTGG
LOC_Os09g19340
OsAffx.29922.1.S1_at--1001--9591Chr09:11567211..11567235 (25 bp)
TCATCGGCGACGGTCGGATTGCATT
LOC_Os09g19340
OsAffx.29922.1.S1_at--854--4591Chr09:11567205..11567229 (25 bp)
GCGACGGTCGGATTGCATTGCTGTC
LOC_Os09g19340
OsAffx.29922.1.S1_at--217--7191Chr09:11567199..11567223 (25 bp)
GTCGGATTGCATTGCTGTCGGGCAT
LOC_Os09g19340
OsAffx.29922.1.S1_at--205--7931Chr09:11567196..11567220 (25 bp)
GGATTGCATTGCTGTCGGGCATCTC
LOC_Os09g19340
OsAffx.29922.1.S1_at--153--4791Chr09:11567115..11567139 (25 bp)
GCTCCAGCGTCATCTACTTCAACGT
LOC_Os09g19340
Target Sequence 
GGGCAAGCTTCTGTCCCAGTGGCCTCCCGCCTCAGTGTCGCGCTCGTCGCAGCCTACCGATTGCTCACCGTGCGGAGGGG
CGGGCGGTGGACGGTGACGCCCGGGGTGGACGGCGGCGCGCAGGAGCGGGTGGTGGGCGGTGGACGGCGACGCGCGGGGG
CGGGCGGTGGGTGGCGACATGCGGGAGCGGGTGGTAGACGGCGGCACCGTCGTGCTCGTCGGGGCGCGGTGAGGCTGCGG
CGGCGGCGACAACAGTGGCGGAGGCGACGCACGAGGTCCTGCGGGCGCACAGGCTGGCACAACGCCACAGTGGCCACGGT
CATCGGCGACGGTCGGATTGCATTGCTGTCGGGCATCTCTGCGCAGGACCTCTTCGTCTGGTTCCCCGTCTACGGCATCC
GCGTCGACGTCCCTTGCTCCAGCGTCATCTACTTCAACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29922.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis