Browse Element(s) Details


OsAffx.29921.2.S1_at

Description tigr:9637.m01630
TID=OsAffx.29921.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g193609/11Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19330OsAffx.17779.1.S1_x_at11/119+11562901..11564176Stripe rust resistance protein Yr10, putative
LOC_Os09g19330OsAffx.17779.1.S1_at11/119+11562901..11564176Stripe rust resistance protein Yr10, putative
LOC_Os09g19340OsAffx.29922.1.S1_at11/119+11566994..11568754hypothetical protein
LOC_Os09g19350Os.27174.1.A1_at2/119+11575043..11581853Protein kinase domain containing protein, expressed
LOC_Os09g19360OsAffx.29921.2.S1_at9/119+11586115..11587841Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g19370NANA9+11597069..11597738transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19380OsAffx.6331.1.S1_at11/119+11601219..11603382Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative, expressed
LOC_Os09g19390OsAffx.6332.1.S1_at11/119+11605482..11609729Leucine Rich Repeat family protein, expressed
LOC_Os09g19400OsAffx.6333.1.S1_at10/119+11610265..11615749Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g19400OsAffx.32260.1.A1_at1/119+11610265..11615749Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g19400OsAffx.9350.1.S1_at1/119+11610265..11615749Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29921.2.S1_at--204--9291Chr09:11587396..11587420 (25 bp)
TCCGACGGCCCGTACATTGACAACG
LOC_Os09g19360
OsAffx.29921.2.S1_at--61--7271Chr09:11587332..11587356 (25 bp)
GTCCTTACCTGACGCTCAGGAGATT
LOC_Os09g19360
OsAffx.29921.2.S1_at--554--8911Chr09:11587323..11587347 (25 bp)
TGACGCTCAGGAGATTCCCCACAGG
LOC_Os09g19360
OsAffx.29921.2.S1_at--1029--7391Chr09:11587240..11587264 (25 bp)
GTGATAGCGAGGGACAGCCAGAACA
LOC_Os09g19360
OsAffx.29921.2.S1_at--495--1071Chr09:11587231..11587255 (25 bp)
AGGGACAGCCAGAACAGCTCGTCGA
LOC_Os09g19360
OsAffx.29921.2.S1_at--972--9151Chr09:11586978..11587002 (25 bp)
TGCGCTTGTCTAGTCGGCAGAGGAT
LOC_Os09g19360
OsAffx.29921.2.S1_at--668--9831NONE
TAAACAGCTCTGTTACTCGTGCACG
NONE
OsAffx.29921.2.S1_at--372--6771NONE
GTTACTCGTGCACGGTCTGAATTAC
NONE
OsAffx.29921.2.S1_at--278--7331Chr09:11586197..11586221 (25 bp)
GTGCACGGTCTGAATTACCCCTAAA
LOC_Os09g19360
OsAffx.29921.2.S1_at--190--9851Chr09:11586171..11586195 (25 bp)
TATCAAAAACGTCCGATTTACATCC
LOC_Os09g19360
OsAffx.29921.2.S1_at--589--7251Chr09:11586161..11586185 (25 bp)
GTCCGATTTACATCCTAAATTATGA
LOC_Os09g19360
Target Sequence 
TCCGACGGCCCGTACATTGACAACGGGGAGAACCACCAGGCCTCGGGGGACAGTACCACCCGGCGTCCTTACCTGACGCT
CAGGAGATTCCCCACAGGGGAGAGGAACTGCTACGCCCTCCCCACCGTCTCCGGGGACAAGTACCTTGTCCGGGTGGTGA
TAGCGAGGGACAGCCAGAACAGCTCGTCGACGGCGACGACGACGGCGACGCTGCAGTTCGACCTGCACCTCGGGGCGAAC
TACTGGGACACCGTGCACGACGACGGCACCGAGGTGTACGAGGCGTTGTTCATGGCGTGGGCGAGCTGGGCGCCGGTGTG
CCTCGTCAACACCGGCCAGGGAACGCCATACGCGTCGGCGATTGAGCTGAGGCCGCTCGGCAGCGAGATCTACCCGGCCG
TCATGGCCAACCAGTCCCTGCGCTTGTCTAGTCGGCAGAGGATGGGGCAAATAAACAGCTCTGTTACTCGTGCACGGTCT
GAATTACCCCTAAACTATCAAAAACGTCCGATTTACATCCTAAATTATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29921.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis