Browse Element(s) Details


OsAffx.6332.1.S1_at

Description tigr:9637.m01633
TID=OsAffx.6332.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to OsD305
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1939011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19350Os.27174.1.A1_at2/119+11575043..11581853Protein kinase domain containing protein, expressed
LOC_Os09g19360OsAffx.29921.2.S1_at9/119+11586115..11587841Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g19370NANA9+11597069..11597738transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19380OsAffx.6331.1.S1_at11/119+11601219..11603382Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative, expressed
LOC_Os09g19390OsAffx.6332.1.S1_at11/119+11605482..11609729Leucine Rich Repeat family protein, expressed
LOC_Os09g19400OsAffx.6333.1.S1_at10/119+11610265..11615749Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g19400OsAffx.32260.1.A1_at1/119+11610265..11615749Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g19400OsAffx.9350.1.S1_at1/119+11610265..11615749Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g19409NANA9+11621346..11621784NA
LOC_Os09g19420OsAffx.29923.1.S1_at11/119+11623253..11623837hypothetical protein
LOC_Os09g19430NANA9+11624499..11629753transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6332.1.S1_at--945--3251Chr09:11607103..11607127 (25 bp)
CAACAAAACAAACCTGCCCGGATCT
LOC_Os09g19390
OsAffx.6332.1.S1_at--663--1591Chr09:11607043..11607067 (25 bp)
AGCTCCTGTGCTGGTAGTGGTCTCA
LOC_Os09g19390
OsAffx.6332.1.S1_at--1128--1091Chr09:11607028..11607052 (25 bp)
AGTGGTCTCACTTTTAATTGCATAT
LOC_Os09g19390
OsAffx.6332.1.S1_at--552--1131Chr09:11606879..11607005 (25 bp)
AGTCCAATATTTCTATCCCAGGAAG
LOC_Os09g19390
OsAffx.6332.1.S1_at--996--5511Chr09:11606820..11606844 (25 bp)
GAAAATCGCCATTTCACCTACGATG
LOC_Os09g19390
OsAffx.6332.1.S1_at--741--2911Chr09:11606753..11606777 (25 bp)
AAGGAGGCTTCGGATGCGTGTACCA
LOC_Os09g19390
OsAffx.6332.1.S1_at--462--6331Chr09:11606741..11606765 (25 bp)
GATGCGTGTACCATGGCTATTTAGA
LOC_Os09g19390
OsAffx.6332.1.S1_at--670--10671Chr09:11606702..11606726 (25 bp)
TTGCCGTGAAGATCCGTTCTGAAAA
LOC_Os09g19390
OsAffx.6332.1.S1_at--877--10591Chr09:11606686..11606710 (25 bp)
TTCTGAAAAATCATCGCACGGGTTT
LOC_Os09g19390
OsAffx.6332.1.S1_at--738--5191Chr09:11606435..11606458 (24 bp)
GCAATCTTTTTGATCTTCTGAGAGT
LOC_Os09g19390
OsAffx.6332.1.S1_at--437--8892Chr09:11605567..11605587 (21 bp)
TGAGAGTCAAACCACACATCAGTCA
LOC_Os09g19390
Target Sequence 
CAACAAAACAAACCTGCCCGGATCTAAAAAAAGAGCTGCTATCTTAGCTATCTCAATAGCAGCTCCTGTGCTGGTAGTGG
TCTCACTTTTAATTGCATATTTGATCTGGAGAGCGAAAGGAAAGTCCAATATTTCTATCCCAGGAAGTGAAAAATATCAT
TGGGATCGTCTACAAAAAAATGAAAATCGCCATTTCACCTACGATGAGCTGAAGAAGCTTACTGATAACTTCCAACAGTT
CATTGGAGAAGGAGGCTTCGGATGCGTGTACCATGGCTATTTAGAAGACAATACTGAAGTTGCCGTGAAGATCCGTTCTG
AAAAATCATCGCACGGGTTTAATGAGTTTTTAGCCGAGCTTGAGAGCTTGACAAAGGTCCGTCACAAGAATCTAGTTTCT
TTGGTTGGCTACTGCTCGGAGAAGGCTCATTTAGCTCTTATTTACGAGTACATGCCTAGAGGCAATCTTTTTGATCTTCT
GAGAGTCAAACCACACATCAGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6332.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis