Browse Element(s) Details


OsAffx.29923.1.S1_at

Description tigr:9637.m01636
TID=OsAffx.29923.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1942011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19380OsAffx.6331.1.S1_at11/119+11601219..11603382Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative, expressed
LOC_Os09g19390OsAffx.6332.1.S1_at11/119+11605482..11609729Leucine Rich Repeat family protein, expressed
LOC_Os09g19400OsAffx.6333.1.S1_at10/119+11610265..11615749Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g19400OsAffx.32260.1.A1_at1/119+11610265..11615749Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g19400OsAffx.9350.1.S1_at1/119+11610265..11615749Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g19409NANA9+11621346..11621784NA
LOC_Os09g19420OsAffx.29923.1.S1_at11/119+11623253..11623837hypothetical protein
LOC_Os09g19430NANA9+11624499..11629753transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19440OsAffx.17780.1.S1_at10/119+11637039..11638060hypothetical protein
LOC_Os09g19450OsAffx.32056.1.S1_x_at7/119+11643015..11647246transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19450OsAffx.10637.3.S1_s_at6/119+11643015..11647246transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19450OsAffx.10637.4.S1_s_at5/119+11643015..11647246transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19450OsAffx.10637.1.S1_s_at3/119+11643015..11647246transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19450OsAffx.32056.1.S1_at2/119+11643015..11647246transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19460NANA9+11647556..11647918hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29923.1.S1_at--406--9071Chr09:11623309..11623333 (25 bp)
TGCTAGAGGCAACGGCACTATAGGA
LOC_Os09g19420
OsAffx.29923.1.S1_at--330--271Chr09:11623328..11623352 (25 bp)
ATAGGAGGCGAGAACAGCAACACCA
LOC_Os09g19420
OsAffx.29923.1.S1_at--1145--1912Chr09:11623353..11623377 (25 bp)
ACGGATCGGAGGCATCAACACCAAC
LOC_Os09g19420
OsAffx.29923.1.S1_at--685--2151Chr09:11623370..11623394 (25 bp)
ACACCAACACTATCTCATCTAGTAC
LOC_Os09g19420
OsAffx.29923.1.S1_at--514--3711Chr09:11623388..11623409 (22 bp)
CTAGTACTGGAGAGTTCTCTGGCCT
LOC_Os09g19420
OsAffx.29923.1.S1_at--860--10571Chr09:11623604..11623628 (25 bp)
TTCTCCCTCCGATGGTGGGAAGGGT
LOC_Os09g19420
OsAffx.29923.1.S1_at--950--7551Chr09:11623676..11623700 (25 bp)
GGGCCGGAGGCTATGGATCCATACA
LOC_Os09g19420
OsAffx.29923.1.S1_at--1160--2151Chr09:11623698..11623722 (25 bp)
ACACCAGGGCATATCTATTGACCGA
LOC_Os09g19420
OsAffx.29923.1.S1_at--354--3671Chr09:11623712..11623736 (25 bp)
CTATTGACCGAACCCCTAGTTGAGG
LOC_Os09g19420
OsAffx.29923.1.S1_at--799--2611Chr09:11623722..11623746 (25 bp)
AACCCCTAGTTGAGGTGGATCTGGT
LOC_Os09g19420
OsAffx.29923.1.S1_at--295--5971Chr09:11623769..11623793 (25 bp)
GAGAACAACGGCCAAGTGCTCCTCG
LOC_Os09g19420
Target Sequence 
TGCTAGAGGCAACGGCACTATAGGAGGCGAGAACAGCAACACCAACGGATCGGAGGCATCAACACCAACACTATCTCATC
TAGTACTGGAGAGTTCTCTGGCCTTCTCCCTCCGATGGTGGGAAGGGTGTAGTTCGATGGCCACGGGTCCTGGAGTTGCG
GAGCTATCGGCAGTTGGGCCGGAGGCTATGGATCCATACACCAGGGCATATCTATTGACCGAACCCCTAGTTGAGGTGGA
TCTGGTGGCAATTTCCGATATTTTTGGAGAGAACAACGGCCAAGTGCTCCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29923.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis