Browse Element(s) Details


OsAffx.9350.1.S1_at

Description gb:NM_191739.1
DB_XREF= gi:34910561
GEN=B1131B07.9
TID=OsAffx.9350.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1131B07.9 (B1131B07.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g194001/11Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19360OsAffx.29921.2.S1_at9/119+11586115..11587841Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g19370NANA9+11597069..11597738transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19380OsAffx.6331.1.S1_at11/119+11601219..11603382Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative, expressed
LOC_Os09g19390OsAffx.6332.1.S1_at11/119+11605482..11609729Leucine Rich Repeat family protein, expressed
LOC_Os09g19400OsAffx.6333.1.S1_at10/119+11610265..11615749Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g19400OsAffx.32260.1.A1_at1/119+11610265..11615749Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g19400OsAffx.9350.1.S1_at1/119+11610265..11615749Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g19409NANA9+11621346..11621784NA
LOC_Os09g19420OsAffx.29923.1.S1_at11/119+11623253..11623837hypothetical protein
LOC_Os09g19430NANA9+11624499..11629753transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19440OsAffx.17780.1.S1_at10/119+11637039..11638060hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9350.1.S1_at--952--2611Chr01:30034897..30034921 (25 bp)
AACCCGCATAGCAGAGGCGTCATGT
NONE
OsAffx.9350.1.S1_at--213--4271Chr01:30034813..30034837 (25 bp)
CCGGCACGTTTTATGGGTTCATGGA
NONE
OsAffx.9350.1.S1_at--853--4671Chr01:30034761..30034785 (25 bp)
GCGGTCGTCGGCTGCAGAAAACTGT
NONE
OsAffx.9350.1.S1_at--1031--2411Chr01:30034744..30034768 (25 bp)
AAAACTGTGAATTACTTGAGGCCTT
NONE
OsAffx.9350.1.S1_at--925--3611Chr01:30034500..30034754 (25 bp)
CTTGAGGCCTTGTGCATGGATCGAT
NONE
OsAffx.9350.1.S1_at--443--6391Chr01:30034482..30034506 (25 bp)
GATCGATGGAGTCAGCTCAGCAGCC
NONE
OsAffx.9350.1.S1_at--514--8191Chr01:30034449..30034473 (25 bp)
GGAAGATGAATTTTACGCCGTTATA
NONE
OsAffx.9350.1.S1_at--650--4151Chr01:30034434..30034458 (25 bp)
CGCCGTTATAACTTCGTGGAGTGTG
NONE
OsAffx.9350.1.S1_at--1158--7451Chr01:30034414..30034438 (25 bp)
GTGTGAACCGTTTGCGAAATTTCTT
NONE
OsAffx.9350.1.S1_at--486--771Chr01:30033746..30033770 (25 bp)
ATGTCGAGTTGGCTCAGCTCGGTCT
NONE
OsAffx.9350.1.S1_at--59--1599Chr11:7407632..7407687 (25 bp)
AGCTCGGTCTGGCTCGTTATCCTAA
NONE
Target Sequence 
AACCCGCATAGCAGAGGCGTCATGTCTGACGGCGGAGCTTCGGCCAGCGAACGGGGACAGAGGCGCGAGGACTGCGGGTT
TCCCCCGGCACGTTTTATGGGTTCATGGAGCGTGGGCGGACACTGGGACAGTGACAGCGGTCGTCGGCTGCAGAAAACTG
TGAATTACTTGAGGCCTTGTGCATGGATCGATGGAGTCAGCTCAGCAGCCCCAGAGGAGGAAGATGAATTTTACGCCGTT
ATAACTTCGTGGAGTGTGAACCGTTTGCGAAATTTCTTCGAAGTTACGGGAAACGTGCTAGCAGGGGTGGATGTCGAGTT
GGCTCAGCTCGGTCTGGCTCGTTATCCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9350.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis