Browse Element(s) Details


OsAffx.6333.1.S1_at

Description tigr:9637.m01634
TID=OsAffx.6333.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1940010/11Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19360OsAffx.29921.2.S1_at9/119+11586115..11587841Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g19370NANA9+11597069..11597738transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19380OsAffx.6331.1.S1_at11/119+11601219..11603382Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative, expressed
LOC_Os09g19390OsAffx.6332.1.S1_at11/119+11605482..11609729Leucine Rich Repeat family protein, expressed
LOC_Os09g19400OsAffx.6333.1.S1_at10/119+11610265..11615749Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g19400OsAffx.32260.1.A1_at1/119+11610265..11615749Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g19400OsAffx.9350.1.S1_at1/119+11610265..11615749Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g19409NANA9+11621346..11621784NA
LOC_Os09g19420OsAffx.29923.1.S1_at11/119+11623253..11623837hypothetical protein
LOC_Os09g19430NANA9+11624499..11629753transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19440OsAffx.17780.1.S1_at10/119+11637039..11638060hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6333.1.S1_at--680--2071Chr09:11615217..11615241 (25 bp)
ACATTCGCTTGTATCGTCGGCGTAA
LOC_Os09g19400
OsAffx.6333.1.S1_at--700--6771NONE
GTTACTCGGAGTGCTGATTCACACA
NONE
OsAffx.6333.1.S1_at--154--6571Chr09:11613275..11613299 (25 bp)
GATTCACACATACATGCTGGCAGGT
LOC_Os09g19400
OsAffx.6333.1.S1_at--1080--4991Chr09:11611499..11611521 (23 bp)
GCAGGTACCCTAACGATCCATTTGA
LOC_Os09g19400
OsAffx.6333.1.S1_at--595--7631Chr09:11611436..11611460 (25 bp)
GGGAGAATCTTACCACCACATCGAT
LOC_Os09g19400
OsAffx.6333.1.S1_at--998--6131Chr09:11611386..11611410 (25 bp)
GAGGTGCCCGCAGCAATTCTTAAAG
LOC_Os09g19400
OsAffx.6333.1.S1_at--54--4731Chr09:11611347..11611371 (25 bp)
GCTGGGAACAGCACGATACTCAACA
LOC_Os09g19400
OsAffx.6333.1.S1_at--893--4411Chr09:11611256..11611280 (25 bp)
GCCAGGTCCGTGAATTTAACGTCTA
LOC_Os09g19400
OsAffx.6333.1.S1_at--1109--9731Chr09:11611240..11611264 (25 bp)
TAACGTCTATTTCAACAGCGGGCCG
LOC_Os09g19400
OsAffx.6333.1.S1_at--609--7871Chr09:11611182..11611206 (25 bp)
GGTTTCGTCTACAGCACTAGATGGT
LOC_Os09g19400
OsAffx.6333.1.S1_at--1128--831Chr09:11611145..11611169 (25 bp)
ATGGAGACTTCAACGTCACTCTTGC
LOC_Os09g19400
Target Sequence 
ACATTCGCTTGTATCGTCGGCGTAATTTGGGGCCAACGACCGCTAGCGTTACTCGGAGTGCTGATTCACACATACATGCT
GGCAGGTACCCTAACGATCCATTTGATCGGTACTGGTGGCACCAGGACACTAATAATCCAATGTGGGAGAATCTTACCAC
CACATCGATCAACATCAAGCTGGAATCCAGCTTCGAGGTGCCCGCAGCAATTCTTAAAGATGCCGTCCAAGTGGCTGGGA
ACAGCACGATACTCAACATAAAATGGCAAGACAACACAGGCCGCCAGTTCGCGGTGTTTCTGCATTTCGCCGACTTCCAG
GACAGCCAGGTCCGTGAATTTAACGTCTATTTCAACAGCGGGCCGCCCAACAAGTACAGGCCGCACTACCTGGCTGCTGG
TTTCGTCTACAGCACTAGATGGTACAGGGCCATCGATGGAGACTTCAACGTCACTCTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6333.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis