Browse Element(s) Details


OsAffx.6358.1.S1_at

Description tigr:9637.m01836
TID=OsAffx.6358.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2133011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21290Os.51764.1.S1_at11/119+12846731..12847958expressed protein
LOC_Os09g21300OsAffx.29960.1.S1_at11/119+12850202..12851458hypothetical protein
LOC_Os09g21310OsAffx.31069.1.S1_x_at2/119+12852497..12855501retrotransposon protein, putative, unclassified
LOC_Os09g21320OsAffx.20387.1.S1_x_at2/119+12856015..12863188retrotransposon protein, putative, unclassified
LOC_Os09g21320OsAffx.10632.1.S1_at1/119+12856015..12863188retrotransposon protein, putative, unclassified
LOC_Os09g21330OsAffx.6358.1.S1_at11/119+12867346..12868395hypothetical protein
LOC_Os09g21340Os.4936.1.S1_at11/119+12883070..12887548Permease I, putative, expressed
LOC_Os09g21350NANA9+12889630..12891480retrotransposon protein, putative, LINE subclass
LOC_Os09g21360NANA9+12891978..12896016expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6358.1.S1_at--1147--1751Chr09:12867917..12867941 (25 bp)
ACCTGCCGGAGGAGTACTGCCCGGT
LOC_Os09g21330
OsAffx.6358.1.S1_at--848--1311Chr09:12867887..12867911 (25 bp)
AGAGGAGGCAACTCTTCGACGTCGC
LOC_Os09g21330
OsAffx.6358.1.S1_at--146--1851Chr09:12867620..12867644 (25 bp)
ACGACGTCCACGTGTTCCGGATGGA
LOC_Os09g21330
OsAffx.6358.1.S1_at--215--2951Chr09:12867474..12867498 (25 bp)
AAGGCCAACCGCATCTACTGGATCA
LOC_Os09g21330
OsAffx.6358.1.S1_at--465--4971Chr09:12867464..12867488 (25 bp)
GCATCTACTGGATCAACGGCTTCAG
LOC_Os09g21330
OsAffx.6358.1.S1_at--59--3731Chr09:12867460..12867484 (25 bp)
CTACTGGATCAACGGCTTCAGCGAG
LOC_Os09g21330
OsAffx.6358.1.S1_at--1065--8171Chr09:12867425..12867449 (25 bp)
GGAACCTGTACGTGTTCAGCGTCGA
LOC_Os09g21330
OsAffx.6358.1.S1_at--815--9931Chr09:12867417..12867441 (25 bp)
TACGTGTTCAGCGTCGAGGACGGCA
LOC_Os09g21330
OsAffx.6358.1.S1_at--1032--8251Chr09:12867396..12867420 (25 bp)
GGCAGCGTCGAGACCTTCGACACGT
LOC_Os09g21330
OsAffx.6358.1.S1_at--282--1391Chr09:12867386..12867410 (25 bp)
AGACCTTCGACACGTTTGAGTCTCT
LOC_Os09g21330
OsAffx.6358.1.S1_at--325--5631Chr09:12867378..12867402 (25 bp)
GACACGTTTGAGTCTCTCCCGGGTG
LOC_Os09g21330
Target Sequence 
ACCTGCCGGAGGAGTACTGCCCGGTGCCCAAGAGGAGGCAACTCTTCGACGTCGCCGGCGTCGGCGGGAGGTTCTACTTC
GCCGAGAACAAGGGCGAGCTCGGCACGCTGGACTTCACCGGCGGCGGCGGCGGCGGCGGCGGCGGCGAGGCGGTGGTGGG
GGCCATCGCCATCCCCGTCCTGGACTACTTCCCCGCCGGCCAGGTGATGTCCAGCTCGCTGACGTTCCTCGTCGAGTCGC
GCGGCGACCTGTTCCTCGTCGCCATCGCCTTCGAGGGGTACAGCATCGGCGGGCCGTACGACGTCCACGTGTTCCGGATG
GACTTCTCGGCGGCGGCGCCGGGGCCGGCGTGGCGCAGGGCGACGGACATCGGCGACCGGGCGTTCCTCGTCGGCGGCGA
CAACTCCAGCGGCGCGTCGTGCTCGGCGAGCGGGTGCGGGGTGAAGGCCAACCGCATCTACTGGATCAACGGCTTCAGCG
AGGACGAGAAGAGGAACCTGTACGTGTTCAGCGTCGAGGACGGCAGCGTCGAGACCTTCGACACGTTTGAGTCTCTCCCG
GGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6358.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis