Browse Element(s) Details


OsAffx.6401.1.S1_at

Description tigr:9637.m02258
TID=OsAffx.6401.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ligand-gated ion channel protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g259809/11Receptor family ligand binding region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25930OsAffx.17899.1.S1_at10/119+15572825..15574398Ligand-gated ion channel family protein
LOC_Os09g25940OsAffx.17900.1.S1_at11/119+15575817..15579333Receptor family ligand binding region containing protein
LOC_Os09g25950Os.53948.1.S1_at11/119+15582193..15585474expressed protein
LOC_Os09g25960OsAffx.30030.1.S1_x_at11/119+15587269..15593377Receptor family ligand binding region containing protein
LOC_Os09g25970OsAffx.30029.1.S1_at11/119+15596968..15597719hypothetical protein
LOC_Os09g25980OsAffx.6401.1.S1_at9/119+15598148..15605591Receptor family ligand binding region containing protein, expressed
LOC_Os09g25990OsAffx.30030.1.S1_x_at11/119+15609714..15615400Receptor family ligand binding region containing protein, expressed
LOC_Os09g26000OsAffx.30030.2.S1_at10/119+15619334..15624677Receptor family ligand binding region containing protein
LOC_Os09g26000OsAffx.30030.1.S1_x_at2/119+15619334..15624677Receptor family ligand binding region containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006874biological_processcalcium ion homeostasis
GO:0009416biological_processresponse to light stimulus
GO:0005217molecular_functionintracellular ligand-gated ion channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6401.1.S1_at--798--2331Chr09:15599719..15599743 (25 bp)
AAAGAGTACACTATGGTTGGACCGT
LOC_Os09g25980
OsAffx.6401.1.S1_at--386--1531NONE
AGCAGGTTTTGGATATGCATTCCCA
NONE
OsAffx.6401.1.S1_at--484--631NONE
ATGCATTCCCAAAAGGATCTCCTCT
NONE
OsAffx.6401.1.S1_at--391--7971Chr09:15598651..15598675 (25 bp)
GGATCTCCTCTACTTGGAGACATTT
LOC_Os09g25980
OsAffx.6401.1.S1_at--770--2071Chr09:15598632..15598656 (25 bp)
ACATTTCAAAGGCAATCCTCAGCAT
LOC_Os09g25980
OsAffx.6401.1.S1_at--551--7631Chr09:15598599..15598623 (25 bp)
GGGACATTATCATGCAACTTGAGAA
LOC_Os09g25980
OsAffx.6401.1.S1_at--924--7731Chr09:15598529..15598553 (25 bp)
GGTGGGCACTGTGTCTGATCCAGAC
LOC_Os09g25980
OsAffx.6401.1.S1_at--687--9791Chr09:15598499..15598523 (25 bp)
TAACGTTGACAGTTTTAAGGGCCTG
LOC_Os09g25980
OsAffx.6401.1.S1_at--1095--1051Chr09:15598482..15598506 (25 bp)
AGGGCCTGTTCATACTTACTGGAGT
LOC_Os09g25980
OsAffx.6401.1.S1_at--675--6311Chr09:15598397..15598421 (25 bp)
GATGACTAGCATGCAACCTGACCAA
LOC_Os09g25980
OsAffx.6401.1.S1_at--429--291Chr09:15598200..15598224 (25 bp)
ATAGCTCAATTTTCATTTGGCATGA
LOC_Os09g25980
Target Sequence 
AAAGAGTACACTATGGTTGGACCGTTTTATAAGACAGCAGGTTTTGGATATGCATTCCCAAAAGGATCTCCTCTACTTGG
AGACATTTCAAAGGCAATCCTCAGCATAACAGAGGGGGACATTATCATGCAACTTGAGAACAAATGGATTGGGTACCAAA
ATGACTGCAAAAGTGTGGATTCTGCGGTGGGCACTGTGTCTGATCCAGACAAACTTAACGTTGACAGTTTTAAGGGCCTG
TTCATACTTACTGGAGTTGCCTCAACCTCTTCTCTTCTCATAGCTGTAATGATTTACTACTATGAAAAGAAAAAGTCGAT
GACTAGCATGCAACCTGACCAAAATGGAGAAGGTTTAGAAGAAAATCACAAGCCACAAGAAGTGAATGAAGGAGACAGAG
AAGAAGAAAATAATCAGCCTGGAGCAAGTACAGGCCAAAGTGGCCAACAACAACAACAAACTGGAGCAAGAGAGATGTCT
AACATAAATTTACAAACAAGCAGTGTTAGAAGAAATAGCTCAATTTTCATTTGGCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6401.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis